| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0178 |
|---|
| Symbol | |
|---|
| ID | 5537639 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 214755 |
|---|
| End bp | 215741 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640892342 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001430330 |
|---|
| Protein GI | 156740201 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0392] Predicted integral membrane protein |
|---|
| TIGRFAM ID | [TIGR00374] conserved hypothetical protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00230408 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGCAATT GGAAGTTGTG GCTGGGGATC GTCGTTAGCG CCGTTTGCCT CTGGATTGCG
CTTCGTGGAC TCGACTTCCA GACCTTCTGG CAGGTCATGC GTCAGGCGAA TTACTGGTGG
CTCGTCCCCG GGGTCGGCGT CTATTTCCTG GCGGTTTGGG CGCGCACCTG GCGCTGGCAT
TATATGCTGC GCCACCTCGC ACCGGTTCCG GTCTCACGCC TGTTTCCAAT CGTGGTCATC
GGCTACATGG GGAACAACGT CTACCCCGCG CGCGCGGGCG AAGTCCTCCG CTCGTATGTT
CTGAAACGCA AAGAAAATGT CCCGATCAGT GCGTCGCTGG CGACTGTCGT ACTCGAACGT
CTCTTCGATG GTCTGGTGAT GCTCCTGTTC GTCTTTGTGA CGCTGCCATT CGCGCCGTTG
CCGCCGGTTT ACTCATCACT GGTCACTATT CTGAGCCTCC TGTTCCTGAC AGCACTCGCA
GCGTTTCTGG CGCTTGCCGC TCGTCCGACG CATATGAGCC GCGCGTATGC CTGGATTGTG
GATCGGTTCG TTCCTGAACG CTTCCGCGCC ACCGTTCATG GGCTGTTCGA TCGCTTCGTG
GAAGGGTTAC AGTCGCTGCG CAGCCCGCGC GACCTGGCGC TGATCTTTAT GTCGTCAACG
CTCATCTGGT TGACCGAAAC CGGCAAGTAC TGGTTTGTCA TGCACGCTTT CCCGTTCGAG
ACGTCGTTTC TGGTGTTGAT GCTTATGACA GCGGTGGTGA ATCTGTTCAC CACACTCCCA
TCGACGCCGG GATACATCGG CACCTTCCAC GTGCCGGGCA TTGCGGTGCT GATGGCGTTC
AACGTCGATC AGGCAGTGGC GACCAGTTAT ACGGTCGTGC TGCACGTGGC ATTGTGGCTG
CCGATCACGA CGCTTGGCGC CTGGTATATG CTCGGTGAGC ATCTGGGGTG GCGCGATTTT
GGCAGGGCGA CGGAGGCGGT TCGATGA
|
|---|
| Protein sequence | MRNWKLWLGI VVSAVCLWIA LRGLDFQTFW QVMRQANYWW LVPGVGVYFL AVWARTWRWH
YMLRHLAPVP VSRLFPIVVI GYMGNNVYPA RAGEVLRSYV LKRKENVPIS ASLATVVLER
LFDGLVMLLF VFVTLPFAPL PPVYSSLVTI LSLLFLTALA AFLALAARPT HMSRAYAWIV
DRFVPERFRA TVHGLFDRFV EGLQSLRSPR DLALIFMSST LIWLTETGKY WFVMHAFPFE
TSFLVLMLMT AVVNLFTTLP STPGYIGTFH VPGIAVLMAF NVDQAVATSY TVVLHVALWL
PITTLGAWYM LGEHLGWRDF GRATEAVR
|
|---|
| |