| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0166 |
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| Symbol | |
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| ID | 5537627 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 203138 |
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| End bp | 204808 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640892330 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001430318 |
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| Protein GI | 156740189 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.252408 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGTGCAG AACGATTGCA GAAAGTGCTG GCAAGCGCCG GCATTGCGTC GCGGCGTGAC
TGTGAAGAGT ACATTGCCGC AGGGCGCGTC ATGGTCAACG GCAAAGTGGT CCGCATCCCC
GGTACGCGCG TGGACCCGGA ACACGATGAG ATTCTCGTTG ATGGAAAGCC GATCGGTAAG
ATTCACCACC GCACCTATGT CATGCTCCAC AAACCGGCAG GTGTGGTCTC GACAACCGAT
GATCCGCACG GTCGTCCAAC AGTGGTGGAT TTGGTCAATC TGCCACAGCG GTTGTTTCCG
GTCGGACGGC TCGATTACGA CTCAGAAGGC TTGCTGCTGT TGACCGACGA TGGTGAACTA
ACTCAGAAGC TGACCCATCC CAGCTATCAG GTCGAGAAAG AGTATCAGGT CCTGTTGAAT
GACGCGCCAT CGCCGAATGC GCTGCGCGCC TGGCGCACCG GTGTGGAACT GGACGGCGTG
AAAACAGCGC CTGCCTGGGT CGAACTGATC GAGCGCACAC CCGAAGGCGC ATGGGTGCGC
GTGATTTTAC ACGAGGGACG CAAGCGCCAG ATTCGCGAGG TGGCGCGATT GCTGGGGTAC
GAGGTGCGGC GGTTGATCCG TGTGCGCGAA GGTCCGCTGG CTCTGGGAGA CCTCCCAAGC
GGCACGTGGC GCTTTCTTAC CGATGAAGAG GTTGACATGC TGCGAGAGCA CGCCGAACGA
AACGCGGCGG TCGCCGATGC GGAACGGCCG CGTCGGCGTG AACAGGACGA GATGAAAGCA
GTTGGCGGTC GACGGTTGCG GCGTATCAAT CCGTCGGCGC GATTGCTACA GAAAGGTGAA
AAAGTGACAG AGACAACTCT GCCCGAACTC GACGAAGCGA TTGGTAGCGA GAAGGGTATT
CCGTCGATTG GCGAGGAGGG GCGTAAGGTG CGTGATAAAG AGGCGCCCCA TCGCAACGCC
TCTCCAGCGC GCGACTTCCG CCGCGATGAC CGTGGCAGTG GCTTCCGCAG TGACCGCCGC
AACGACCGTG GCAGTGGACC GCGCGACTTC CGCCGCGACG ACCGTGGCAA TGGACCGCGC
GACTTCCGCC GCGACGACCG TGGCAATGGA CCGCGCGACT TCCGCCGCGA TGACCGTGGC
AATGGACCGC GCGACTTCCG CCGCGATGAC CGCAGCAGTG GCTTCCGCAG CGACCGCCGC
GATGACCGTG GCAGTGGCTT CCGCAGTGAC CGCCGCGACG ACCGCAGCAG CGGCTTCCGC
AGTGACCGCC GCGACGACCG CAGCAGCGGC TTCCGCAGTG ACCGCCGCGA CGACCGCAGC
AGCGGCTTCC GCAGTGACCG CCGCGACGAC CGCAGCAGCG GCTTCCGCAG TGACCGCCGC
GACGACCGCA GCAGCGGCTT CCGCAGTGAC CGCCGCGACG ACCGCAGCAG CGGCTTCCGC
AGTGACCGCC GCGATGACCG CAGCAGCGGC TTCCGCAGTG ACCGCCGCGA TGACCGCAGC
AGCGGCTTCC GCAGTGACCG CCGCGACGAC CGCAGCAGCG GCTTCCGCAG TGACCGCCGC
GACGACCGCA GCAGTGGCTT CCGCAGTGAC CGCCGCGATA ACCGTGGGGC TAGAGGCTTT
TCGCGCAGTG ATCGCCCTCC ACCGCGCTAC TCCGAAGATG ATGAGGAATA G
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| Protein sequence | MSAERLQKVL ASAGIASRRD CEEYIAAGRV MVNGKVVRIP GTRVDPEHDE ILVDGKPIGK
IHHRTYVMLH KPAGVVSTTD DPHGRPTVVD LVNLPQRLFP VGRLDYDSEG LLLLTDDGEL
TQKLTHPSYQ VEKEYQVLLN DAPSPNALRA WRTGVELDGV KTAPAWVELI ERTPEGAWVR
VILHEGRKRQ IREVARLLGY EVRRLIRVRE GPLALGDLPS GTWRFLTDEE VDMLREHAER
NAAVADAERP RRREQDEMKA VGGRRLRRIN PSARLLQKGE KVTETTLPEL DEAIGSEKGI
PSIGEEGRKV RDKEAPHRNA SPARDFRRDD RGSGFRSDRR NDRGSGPRDF RRDDRGNGPR
DFRRDDRGNG PRDFRRDDRG NGPRDFRRDD RSSGFRSDRR DDRGSGFRSD RRDDRSSGFR
SDRRDDRSSG FRSDRRDDRS SGFRSDRRDD RSSGFRSDRR DDRSSGFRSD RRDDRSSGFR
SDRRDDRSSG FRSDRRDDRS SGFRSDRRDD RSSGFRSDRR DDRSSGFRSD RRDNRGARGF
SRSDRPPPRY SEDDEE
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