Gene Rcas_0128 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0128 
Symbol 
ID5537588 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp154992 
End bp156293 
Gene Length1302 bp 
Protein Length433 aa 
Translation table11 
GC content60% 
IMG OID640892293 
Productputative PAS/PAC sensor protein 
Protein accessionYP_001430282 
Protein GI156740153 
COG category[T] Signal transduction mechanisms 
COG ID[COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00377] anti-anti-sigma factor 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGGTG ACTCAACCAG CAGCGACACT GATTTCGTGC ATCGAATCGC CAGACTCGAG 
GCGGACCTGG AGGCGGCGCA CCGGCGCATC GCCGAACTGG AGCGCGTTGT CGAACGCGGA
TATGGTATGG TCGATGCCAT ACCTGCAATG GTCTATTTCA AGGATCGGGA GCATCGCTAT
CAATACGGTA ATCGCGCTTT TACCGAGCGT ATCAGGGTGA GCGCCGAAGA GATGGCAGGC
AAGACCGATT ACGACCTCTT TCCGCCAGAA GTTGCGGCAG CCTACCTTGC CGACGATGAG
CGGGTCATGG CGACCGGTGA GCCGAGCTTG GGGATCGAAC TGCCGGTGAG TCGTCCAGAC
GGTACGATTG GATGGGTGTC GAATTCGGCA GTCCCCTATC GCGATCGCAG TGGCGCGGTT
GTTGGTATGG TCGGGATCGC AATCGACATC ACCAGGAGAA AACAGATCGA AGAAGCACTG
CGCCGCAACC AGGAAGTGCA GCGCGCCCTG CTCGACACCA TCCCGGCAAT GGTGTATCTC
AAAGATCGCC AGCATCGCTA TCTCCTGGGC AACCGCGTTT TCGCCGACGC TGCCGGCATT
TCGGTCGATG AGGTTGAGGG CAAGACCGAC CACGACCTCT TTTTGCCGGA AGAAGCGGAG
GCGTATATTG CCGACGATGA GCAGGTGATG GCGACCGGCG AGCCGCACCT GGGCATCGAA
GAAAAAATCA CCGAGGCGAA CGGGCGCGTT ACCTGGCTGA TGGTCTACAA AGCGCCCTTC
CGCGACGAAC AGGGGCGTGT TACCGGCATG GTCGGCATTG CATTCGATGT CACAGCGCGG
AAGGAGATGG AAGAGGCGTT GCGCCGCAGC CAGGCGGAAC AGCAGGCGCT GATCGAGCAA
CAGGCGCAGT TGCTGGCAAC GATTCGGCAA CTTTCGACTC CGGTGCTGCC GGTCACGCAG
GATGCTCTGG TGCTGCCGCT GATCGGCGAC ATCGACACCG CGCGCAGCCA ACAGATCGTC
GAAACATTGT TGAATAGCGT GCAGCGCTAC CGCGCGAAGT GGGCGATCAT CGACATCACC
GGTGTGCCAT TGGTTGACAC AGCGGTTGCC AATCATCTGA TCCAGGCGAC GCAGGGGGTT
GCGCTCCTCG GCGCGCGCAC GATTCTGGTC GGCGTGTCGC CCGAACTGGC GCAGACGATT
GTCGGGCTGG GGGTTGATCT GAAGGGGTTG ATCTCCCAAA GCGACCTGCG CTCGGCGATT
GCGTTCGTGT TGAAGCGTTC ACAGCAACGC TCGTTTGTGT GA
 
Protein sequence
MSGDSTSSDT DFVHRIARLE ADLEAAHRRI AELERVVERG YGMVDAIPAM VYFKDREHRY 
QYGNRAFTER IRVSAEEMAG KTDYDLFPPE VAAAYLADDE RVMATGEPSL GIELPVSRPD
GTIGWVSNSA VPYRDRSGAV VGMVGIAIDI TRRKQIEEAL RRNQEVQRAL LDTIPAMVYL
KDRQHRYLLG NRVFADAAGI SVDEVEGKTD HDLFLPEEAE AYIADDEQVM ATGEPHLGIE
EKITEANGRV TWLMVYKAPF RDEQGRVTGM VGIAFDVTAR KEMEEALRRS QAEQQALIEQ
QAQLLATIRQ LSTPVLPVTQ DALVLPLIGD IDTARSQQIV ETLLNSVQRY RAKWAIIDIT
GVPLVDTAVA NHLIQATQGV ALLGARTILV GVSPELAQTI VGLGVDLKGL ISQSDLRSAI
AFVLKRSQQR SFV