Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_0128 |
Symbol | |
ID | 5537588 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 154992 |
End bp | 156293 |
Gene Length | 1302 bp |
Protein Length | 433 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640892293 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_001430282 |
Protein GI | 156740153 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00377] anti-anti-sigma factor |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGGTG ACTCAACCAG CAGCGACACT GATTTCGTGC ATCGAATCGC CAGACTCGAG GCGGACCTGG AGGCGGCGCA CCGGCGCATC GCCGAACTGG AGCGCGTTGT CGAACGCGGA TATGGTATGG TCGATGCCAT ACCTGCAATG GTCTATTTCA AGGATCGGGA GCATCGCTAT CAATACGGTA ATCGCGCTTT TACCGAGCGT ATCAGGGTGA GCGCCGAAGA GATGGCAGGC AAGACCGATT ACGACCTCTT TCCGCCAGAA GTTGCGGCAG CCTACCTTGC CGACGATGAG CGGGTCATGG CGACCGGTGA GCCGAGCTTG GGGATCGAAC TGCCGGTGAG TCGTCCAGAC GGTACGATTG GATGGGTGTC GAATTCGGCA GTCCCCTATC GCGATCGCAG TGGCGCGGTT GTTGGTATGG TCGGGATCGC AATCGACATC ACCAGGAGAA AACAGATCGA AGAAGCACTG CGCCGCAACC AGGAAGTGCA GCGCGCCCTG CTCGACACCA TCCCGGCAAT GGTGTATCTC AAAGATCGCC AGCATCGCTA TCTCCTGGGC AACCGCGTTT TCGCCGACGC TGCCGGCATT TCGGTCGATG AGGTTGAGGG CAAGACCGAC CACGACCTCT TTTTGCCGGA AGAAGCGGAG GCGTATATTG CCGACGATGA GCAGGTGATG GCGACCGGCG AGCCGCACCT GGGCATCGAA GAAAAAATCA CCGAGGCGAA CGGGCGCGTT ACCTGGCTGA TGGTCTACAA AGCGCCCTTC CGCGACGAAC AGGGGCGTGT TACCGGCATG GTCGGCATTG CATTCGATGT CACAGCGCGG AAGGAGATGG AAGAGGCGTT GCGCCGCAGC CAGGCGGAAC AGCAGGCGCT GATCGAGCAA CAGGCGCAGT TGCTGGCAAC GATTCGGCAA CTTTCGACTC CGGTGCTGCC GGTCACGCAG GATGCTCTGG TGCTGCCGCT GATCGGCGAC ATCGACACCG CGCGCAGCCA ACAGATCGTC GAAACATTGT TGAATAGCGT GCAGCGCTAC CGCGCGAAGT GGGCGATCAT CGACATCACC GGTGTGCCAT TGGTTGACAC AGCGGTTGCC AATCATCTGA TCCAGGCGAC GCAGGGGGTT GCGCTCCTCG GCGCGCGCAC GATTCTGGTC GGCGTGTCGC CCGAACTGGC GCAGACGATT GTCGGGCTGG GGGTTGATCT GAAGGGGTTG ATCTCCCAAA GCGACCTGCG CTCGGCGATT GCGTTCGTGT TGAAGCGTTC ACAGCAACGC TCGTTTGTGT GA
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Protein sequence | MSGDSTSSDT DFVHRIARLE ADLEAAHRRI AELERVVERG YGMVDAIPAM VYFKDREHRY QYGNRAFTER IRVSAEEMAG KTDYDLFPPE VAAAYLADDE RVMATGEPSL GIELPVSRPD GTIGWVSNSA VPYRDRSGAV VGMVGIAIDI TRRKQIEEAL RRNQEVQRAL LDTIPAMVYL KDRQHRYLLG NRVFADAAGI SVDEVEGKTD HDLFLPEEAE AYIADDEQVM ATGEPHLGIE EKITEANGRV TWLMVYKAPF RDEQGRVTGM VGIAFDVTAR KEMEEALRRS QAEQQALIEQ QAQLLATIRQ LSTPVLPVTQ DALVLPLIGD IDTARSQQIV ETLLNSVQRY RAKWAIIDIT GVPLVDTAVA NHLIQATQGV ALLGARTILV GVSPELAQTI VGLGVDLKGL ISQSDLRSAI AFVLKRSQQR SFV
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