| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0077 |
|---|
| Symbol | leuS |
|---|
| ID | 5537536 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 96878 |
|---|
| End bp | 99592 |
|---|
| Gene Length | 2715 bp |
|---|
| Protein Length | 904 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640892242 |
|---|
| Product | leucyl-tRNA synthetase |
|---|
| Protein accession | YP_001430232 |
|---|
| Protein GI | 156740103 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0495] Leucyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00396] leucyl-tRNA synthetase, eubacterial and mitochondrial family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.622899 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0000864885 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGACA CAGGGACAAA ACGGCGTATC GAACGGTTCG ATCCGGCGAT CGAGCCAAAA
TGGCGTGAGT TCTGGGAGCG CGAGGGCATC TTCAAAGCGG GGCGCCGCGC AGGTGCGCCG
CGTCGCTATA TCCTCGAAAT GTTCCCCTAT CCCAGTGGCG ACCTCCACAT CGGTCATCTG
AAGAACTACG TCATCGGCGA TGCGCTGACC CGCTACTATG TCATTCGCGG CTACGATGTG
CTGCATCCCT TTGGGTGGGA CGCCTTCGGT CTGCCGGCGG AGAATGCCGC GATCAAGTAT
GGTCGCCATC CGCGCGAATG GACTTACGGC AACATCGCCG AGTCGAAGAA GTCGCTCGAG
ATCGCCGGCA TTATGTACGA TTGGTCGCGC GAAGTGACGA CCTGTGATCC TGATTACTAC
CGCTGGAACC AGTGGCTGTT CCTGTTGCTC TATCGCAAGG GGCTGGCATA CCGCGCAAAA
GCGACGGTCA ACTGGGACCC GGTGGATCAA ACGGTGCTGG CGAACGAACA GGTCGATGCC
GAAGGGCGCA GTTGGCGCAG CGGCGCGAAA GTCGAAAAGC GCGAATTGGA ACAGTGGTTC
TTCAGGATCA CAGCCTATGC CGAGCGCCTG CTGAACGACC TGGATAAACT GGACAAGTGG
CCCGAAAACG TCAAGACCAT GCAGCGCAAC TGGATCGGCA GGAGTGAAGG CGCCGAAGTC
ACCTTCCTGG CGCTGCCGCC GGGCGCCGAC CTGCATGCGC CGCCGCCTCC CGACGCCGAA
CCGCTGGTGG TGTTCACCAC CCGCCCTGAT ACGCTCTGGG GCGCGACGTT CATGGTGCTG
GCGCCGGAGC ATCCGCTGGT GTCGAAATTG ACCGCGCCTG AACGCCGCGC CGAAGTCGAG
GCGTACATCG CCAGAGCGCG TATGGAGAGC GAAATCGAAC GCACCAGCGC CACGCGCGAA
AAAACCGGCG TCTTCCTGGG GTCCTACGCG ATCAATCCGG TCAATGATGA GCGCATCCCG
ATCTGGATTG CCGACTATGT ATTGATGGGG TATGGCGCCG GCGCGATCAT GGCGGTGCCT
GCGCACGATG AGCGCGACTT CGCGTTTGCC CGTCAGTTCG GCTTGCCGGT GCGCGTCGTC
GTGCAACCGC CGGGCGAAAC GCTGGATGGC GCAACGATGA CGGAAGCCTG GCCCGGCGAT
GGCGTGATGG TCAATTCGGG ACCGATCAAC GGTCTTCCGG TCGGCAAAGG GGAAGGGCAG
AGCGTCAAGG CGACTATCGC CTGGCTGGAA GCGAATGGCA AAGGGAAGGG AACCGTCACC
TATCGGTTGC GCGACTGGCT GATCAGCCGT CAGCGCTATT GGGGCACTCC GATCCCGATG
CTCCACCTGC CGGATGGGAC GATCAAACCG GTGCCGGAGG ATCAGTTGCC CGTCGTGCTG
CCCGAAGTGC AGGATTATTT GCCGAAAGGC AAAAGCCCGC TGGCAGCCGC CGAGTCGTGG
GTCAATACCA TCGACCCCGA GACCGGACAA CCGGCGCGGC GCGATACCGA CACAATGGAC
ACGTTTGTGG ATTCTTCGTG GTACTTCCTG CGTTTCTGCG ACGCCAGGAA CGACCGCGAA
ATCTTCTCGC GCGAGGCGGC GCACCGGTGG ATGCCGGTCG ATCAGTACAT CGGCGGCGTC
GAGCACGCCA TTCTGCACCT GCTCTATGCG CGCTTCATCA CCAAGGTGCT GTACGACGAA
GGGTTGGTGC CCGACGATGA GCCGTTCAGG GCATTGTTCA CCCAAGGCAT GGTGCAGCGC
CGCGTTCGCA CACCACTTGA GGTTGTTGCG CCGGGTATGG TGCGCTTCCC TGAAGAATTG
CGGCGCAAAC TGGAATTGCC TGCCGATGCA CAGAGCCTTG ATCAGGCGCG CGCGTTGCTG
AAAGAACGCG GCTATACGCT GGAAGAGGAG AGCAATGGCG GGTTCACCGC CGTATCCGGT
CCGGTCACCA TGTCGAAGAG CGCCGGAAAT GGCATTCCGG TCGGTCCATT CGTGCGGCAG
TACGGCTCCG ACGTGGCGCG GATCGTGGTG CTGTTCGCCG CGCCGCCGGA AAACAGCATG
GAATGGACCG ACGAAGGGGT TGCCGGAGCG CAACGCTTCC TGAACCGGAT CGTGGCGCTG
TTCAGCCCGG ATCGGGAGGA GATCGTCGCT GCACTGAACT CCGGCAACGG CGCCGCTCCC
GAAGGTGAGG AACGCGCGTT GTACCGCAAA CTGCACGAGA CCATCCGCAA GGTGACGCTT
GATACCGAAC AGTTTCGCTT CAATACCGCA ATTGCGGCAT TGATGGAGTT GCTGAACGAG
GCGAGCCGCT ACCGCTCCGA GGCGGGTCGG GTGACGCCGG TCTTTGCGCA GACGGCGGCA
ACCTTTGCGC GGTTGCTCTC GCCGTTTGCG CCGCACTTGG CGGAAGAACT GCACTCCTGG
TGCGGCGGAA CCGGCAGCGT CTACGATACC GGTTGGCCCG AATGGGACGA AGCAGCGCTG
GCGCTCGATG AAGTCGAGAT TGTGTTGCAG GTGAACGGCA AACTGCGTGG CAGGATCATG
GCGCCTGCCA ATGCTGATGA GCAACAGTTG CGCGAATGGG CGTTGACCAA TCCGCGCGTG
CTGAGTTTCG TCGGCGATAA GACCGTGCGC AAGGTTGTGG TTGTGCCTGG GAAACTAGTG
AACGTGGTGG TGTAG
|
|---|
| Protein sequence | MSDTGTKRRI ERFDPAIEPK WREFWEREGI FKAGRRAGAP RRYILEMFPY PSGDLHIGHL
KNYVIGDALT RYYVIRGYDV LHPFGWDAFG LPAENAAIKY GRHPREWTYG NIAESKKSLE
IAGIMYDWSR EVTTCDPDYY RWNQWLFLLL YRKGLAYRAK ATVNWDPVDQ TVLANEQVDA
EGRSWRSGAK VEKRELEQWF FRITAYAERL LNDLDKLDKW PENVKTMQRN WIGRSEGAEV
TFLALPPGAD LHAPPPPDAE PLVVFTTRPD TLWGATFMVL APEHPLVSKL TAPERRAEVE
AYIARARMES EIERTSATRE KTGVFLGSYA INPVNDERIP IWIADYVLMG YGAGAIMAVP
AHDERDFAFA RQFGLPVRVV VQPPGETLDG ATMTEAWPGD GVMVNSGPIN GLPVGKGEGQ
SVKATIAWLE ANGKGKGTVT YRLRDWLISR QRYWGTPIPM LHLPDGTIKP VPEDQLPVVL
PEVQDYLPKG KSPLAAAESW VNTIDPETGQ PARRDTDTMD TFVDSSWYFL RFCDARNDRE
IFSREAAHRW MPVDQYIGGV EHAILHLLYA RFITKVLYDE GLVPDDEPFR ALFTQGMVQR
RVRTPLEVVA PGMVRFPEEL RRKLELPADA QSLDQARALL KERGYTLEEE SNGGFTAVSG
PVTMSKSAGN GIPVGPFVRQ YGSDVARIVV LFAAPPENSM EWTDEGVAGA QRFLNRIVAL
FSPDREEIVA ALNSGNGAAP EGEERALYRK LHETIRKVTL DTEQFRFNTA IAALMELLNE
ASRYRSEAGR VTPVFAQTAA TFARLLSPFA PHLAEELHSW CGGTGSVYDT GWPEWDEAAL
ALDEVEIVLQ VNGKLRGRIM APANADEQQL REWALTNPRV LSFVGDKTVR KVVVVPGKLV
NVVV
|
|---|
| |