Gene Rcas_0025 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0025 
Symbol 
ID5537482 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp31620 
End bp32162 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content60% 
IMG OID640892190 
Productputative transmembrane anti-sigma factor 
Protein accessionYP_001430182 
Protein GI156740053 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.661777 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00212862 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATGAATT GCAATGAAGC CCGCACACTG CTGGCGCTTC ACACGGAACA GGAGATCACC 
GATCCTGCGC TGCGCGATCA TCTTGCGCGT TGCCCGGCGT GCAGCCTCTA CCACCGGCGT
AATCGGGTCA TCGATGCAAC GCTGCGCGAA GAACTCCGCT GGGAAACGCC TTCGGTATTG
ACGGCGCAGT TGATGGCGAT TGCGTTGCAG GCGTCTCATC TCACCCCTGT GCCGCGCCCA
CGCCGCTGGT ACATTATCAC CATCTATAGT CTGACCGCTA TGGTCATGGC TGTCTCACTG
GCGGTCGCGT GGACCTATGG CGGCAGTTTG CTGATGCAGG TCGGTCTGAG CAATGCACTG
GCGTGGATAT TCGACACACC GACGCAGTGG CTGGCGCAGG TGGTGCAGAC ACAACCCGAC
TCGCAGCGGG TGATCGAGTT CGCCATGCGT GTGCGGGATC AATTGCTCTG GCTGCTGCTG
GCGGCTATTT TGTGGGCGCT GCTCGACCGC TCGCCACAAT CGTCGCTTGC CAGAACCGAA
TAG
 
Protein sequence
MMNCNEARTL LALHTEQEIT DPALRDHLAR CPACSLYHRR NRVIDATLRE ELRWETPSVL 
TAQLMAIALQ ASHLTPVPRP RRWYIITIYS LTAMVMAVSL AVAWTYGGSL LMQVGLSNAL
AWIFDTPTQW LAQVVQTQPD SQRVIEFAMR VRDQLLWLLL AAILWALLDR SPQSSLARTE