Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_0025 |
Symbol | |
ID | 5537482 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 31620 |
End bp | 32162 |
Gene Length | 543 bp |
Protein Length | 180 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640892190 |
Product | putative transmembrane anti-sigma factor |
Protein accession | YP_001430182 |
Protein GI | 156740053 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.661777 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.00212862 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGATGAATT GCAATGAAGC CCGCACACTG CTGGCGCTTC ACACGGAACA GGAGATCACC GATCCTGCGC TGCGCGATCA TCTTGCGCGT TGCCCGGCGT GCAGCCTCTA CCACCGGCGT AATCGGGTCA TCGATGCAAC GCTGCGCGAA GAACTCCGCT GGGAAACGCC TTCGGTATTG ACGGCGCAGT TGATGGCGAT TGCGTTGCAG GCGTCTCATC TCACCCCTGT GCCGCGCCCA CGCCGCTGGT ACATTATCAC CATCTATAGT CTGACCGCTA TGGTCATGGC TGTCTCACTG GCGGTCGCGT GGACCTATGG CGGCAGTTTG CTGATGCAGG TCGGTCTGAG CAATGCACTG GCGTGGATAT TCGACACACC GACGCAGTGG CTGGCGCAGG TGGTGCAGAC ACAACCCGAC TCGCAGCGGG TGATCGAGTT CGCCATGCGT GTGCGGGATC AATTGCTCTG GCTGCTGCTG GCGGCTATTT TGTGGGCGCT GCTCGACCGC TCGCCACAAT CGTCGCTTGC CAGAACCGAA TAG
|
Protein sequence | MMNCNEARTL LALHTEQEIT DPALRDHLAR CPACSLYHRR NRVIDATLRE ELRWETPSVL TAQLMAIALQ ASHLTPVPRP RRWYIITIYS LTAMVMAVSL AVAWTYGGSL LMQVGLSNAL AWIFDTPTQW LAQVVQTQPD SQRVIEFAMR VRDQLLWLLL AAILWALLDR SPQSSLARTE
|
| |