Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_0024 |
Symbol | |
ID | 5537481 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 30940 |
End bp | 31614 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640892189 |
Product | ECF subfamily RNA polymerase sigma-24 factor |
Protein accession | YP_001430181 |
Protein GI | 156740052 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.471332 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.00220906 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | GTGGCTGAGC CATCTGCTGA TATCATCCGG CGTGCGCAGG CTGGTGATCC CGAAGCGTTG ACGCAACTCG TGCTTAGTCA GCAGCAGTAT GTCTACAGCA TTGCCATGAG CGTGCTGAAG AATCCCGATG ACGCTGCGGA TCTGACGCAG GAAGCGTTTA TTCGTCTGTT CCGCGCACTG CCGCAGTACA ATGGCGAGAG CCGATTCACG ACCTGGCTCT ACCGCCTGGT CGTGAACCTG GGACGCGACG AACTGCGTCG CCGTGGGCGG CAGGCGCCGC TGGCGTCTCC GGCAGACGGC GATGAGGAAC TCGATGCAAT CGATGTCATC GCCGACGATG ATCGCTGGTC GGACCCGGAG GAAGCGCTTG ACTCGCGTGA ACTACGCAGC GAAGTGCGTC GCGCATTGGC GCAACTCGAG GAGCATTATC GCCTGGTGCT GACACTCTAT TACTTCGAGG ACATGAAATA TACCGACATT GCCGAGATCC TCGACCTGCC GCTCAACACG GTCAAAAGTC ACATTCGGCG CGGGAAGGAG CGCCTGGCGG CCATTCTCCA GGAGCGTGAG CAACCGCCGG CTGCACGCGC ACTGCCGGCG CCAACGCAAC CGGAGACCGG GAGCAGACCG TTCAGCCCGT TTATGCGGTT GCCTGCGCCG GTTGGGGGGA GGTAA
|
Protein sequence | MAEPSADIIR RAQAGDPEAL TQLVLSQQQY VYSIAMSVLK NPDDAADLTQ EAFIRLFRAL PQYNGESRFT TWLYRLVVNL GRDELRRRGR QAPLASPADG DEELDAIDVI ADDDRWSDPE EALDSRELRS EVRRALAQLE EHYRLVLTLY YFEDMKYTDI AEILDLPLNT VKSHIRRGKE RLAAILQERE QPPAARALPA PTQPETGSRP FSPFMRLPAP VGGR
|
| |