Gene Rcas_0001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0001 
SymboldnaA 
ID5541967 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp370 
End bp1812 
Gene Length1443 bp 
Protein Length480 aa 
Translation table11 
GC content57% 
IMG OID640892166 
Productchromosomal replication initiation protein 
Protein accessionYP_001430158 
Protein GI156740029 
COG category[L] Replication, recombination and repair 
COG ID[COG0593] ATPase involved in DNA replication initiation 
TIGRFAM ID[TIGR00362] chromosomal replication initiator protein DnaA 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000170377 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000000650471 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
GTGAACCTCA CCAAAGTCTG GAACACAACC CTGGGATCGC TTCAGGTCCA ACTGCCGCGC 
CACGAGTACA ACACATGGGT GCGTGGCGCC AACCTGCTCG ATATCGATAA TGGTGTGGCG
ATCATTCGCG CGCCAAATGC CTTCATCAAA GAAGGTCTCG AGAGCCGCTA CCTGACCACG
CTCCGCGAGC AATTGGGATC GGTCGTCGGG TTTCCTGTCG ATGTCCGCAT TGTTCTGGCA
ACGTCTGAGT CTGAGCGGAT CGACGGTGCA TCGATCAATG GCAGGCATGC CGCTCGCGAT
ACACGCAAAA GCGACCATCA CGCGCCACTG TCAGGCGGGT ATGGCAACGG CATAAGCCAT
CCTCTTGAGC GCGCATCGGT GCATCAACTC GAACTGCATC GGGCAGTGCG ATCCAGCATG
CTCAATCCGC GATATACCTT CGACCGCTTC ATCATCGGCC CAAGCAACCG CCTGGCAAAC
GCAGCCTGCA TGGCCGTGGC GGAACATCCA GCCCAGGCGT ACAACCCGCT GTTTCTGTAT
GGCGGCGTGG GATTGGGAAA AACGCACCTG TTGCACGCTA TCGGCAATTT CGTGCTGGAT
CGCGATCCAG AGGTGAATGT GCTGTATGTC TCCTCGGAAA CCTTTACCAA TGACCTGATT
AACTCCATCC GTCGCCAGCA GACTGAGGAG TTCCGTATTC GCTATCGGAA TATCGATATT
CTGCTGATTG ATGATATTCA GTTCATTGCG GGCAAGGAGC AGACGCAGGA AGAATTTTTT
CATACCTTCA ATACCCTGCA CTCAGCCGGC AAACAGATCA TCATTTCATC GGATCGGTCG
CCCAAAGCGA TCCTGACGCT CGAAGAACGC CTGCGCTCGC GCTTCGAGTG GGGGCTGATC
GTCGATGTGC AAATGCCCGA CCTTGAGACC CGCACGGCGA TTCTGCGCGC AAAAGCGGAA
CAATCGCCGG TTCCGGTGCC ACAGCCGGTG ATTGATTTCC TGGCTCAACG CATCCAAAGC
CACATTCGTG AACTTGAAGG GTGCCTCAAT CGGGTGACGG CATACGCGCA AATGTATAAT
ATTCCGGTCA CGATTGAGGT GGCGACGGCA GCGTTGAGCG AATTGCTCGA TACGAACCGT
CGCAAGCGGG TCACTCCCGA GGCGATCCTG CGCGAGGTTG CGGCGTTCTA TAGCGTTGAT
CTGCGCTCCC TCCAGGGGCG CGGACGCAGC CGCAATATTG TCACTCCCCG TCACGTGGCA
ATGTATCTGC TCCGCGAGGA GACCGACTCC AGCCTGATGG AGATCGGGCA GTTGCTCGGT
GGTCGCGATC ATACGACGGT GATGTATGGA TGCGACAAGA TCGCTGAAGA GATCAACACC
GATGCACGGC TGCGCCAGGA AGTCGCTGCG ATTCGTGAGC GGTTGATGAA CAGCGCTGTG
TAG
 
Protein sequence
MNLTKVWNTT LGSLQVQLPR HEYNTWVRGA NLLDIDNGVA IIRAPNAFIK EGLESRYLTT 
LREQLGSVVG FPVDVRIVLA TSESERIDGA SINGRHAARD TRKSDHHAPL SGGYGNGISH
PLERASVHQL ELHRAVRSSM LNPRYTFDRF IIGPSNRLAN AACMAVAEHP AQAYNPLFLY
GGVGLGKTHL LHAIGNFVLD RDPEVNVLYV SSETFTNDLI NSIRRQQTEE FRIRYRNIDI
LLIDDIQFIA GKEQTQEEFF HTFNTLHSAG KQIIISSDRS PKAILTLEER LRSRFEWGLI
VDVQMPDLET RTAILRAKAE QSPVPVPQPV IDFLAQRIQS HIRELEGCLN RVTAYAQMYN
IPVTIEVATA ALSELLDTNR RKRVTPEAIL REVAAFYSVD LRSLQGRGRS RNIVTPRHVA
MYLLREETDS SLMEIGQLLG GRDHTTVMYG CDKIAEEINT DARLRQEVAA IRERLMNSAV