Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CBUD_0393 |
Symbol | rpoD |
ID | 5458623 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Coxiella burnetii Dugway 5J108-111 |
Kingdom | Bacteria |
Replicon accession | NC_009727 |
Strand | - |
Start bp | 377250 |
End bp | 379346 |
Gene Length | 2097 bp |
Protein Length | 698 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | |
Product | RNA polymerase sigma factor |
Protein accession | YP_001423814 |
Protein GI | 154705741 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.735984 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAAGCC GTAAAAAGAA ATCCAGCGTT ACCAAAACTA AGAAAAAAAC AACTGGTAAA AAAGCCCGTG TAACTGCTAA AGCTAAACCT TCCGTAAAGT CAAAACTTAA AACGGTAAAG CGCGCGCCGG CAAAACCGAA ATCGGTGACA GTGGCTAAAA CTAAGTCTAA AAAAGAAAAG GCTAAAGTCG TGACACAGCC ATTACCTAAA ACTGCTGAGA AAAAACCTTC TGCGCCGCCT TCAGAAACTC AACAACCCAA GATAGGAGAA AACGCAGCAG AAAGCCAACG TTTAGGCTTT GGCGCACTCC TAGAAGAAGC CAAAAATAAG GGCTACCTGG TACACGAAGA TTTAATTAAC CTTCTCCCTA ACGATTACGC AGATCCTTCC CAAATGGAAG GCATTATCGG TCGTTTAACC GAAATGGGTA TTAAAGTTTT CGAAATTCCT CCTGACGCCG ATTCCCTGCT TTTGGAGGAA GATACCCAAT CCGACGATGA CGAGATCAAC GAGGACGTGG CCGAAGTATT AGCGACAGAA ACCCGAACTA CTGATCCCGT TCGCATGTAC ATGCGTGAAA TGGGGAGCGT GGAGTTGCTA ACACGGGAAG GCGAAATTGT CATCGCCAAA CGCATTGAAG AAGGCATCCG CCAAGTCATG GGCGCCGTGG TCCAATACCC TGAACTTATT GAAAAATTTA TTAAAGAATA TGACACCATC GTCGCTACTG AAGGCCGCTT AAGTGATCTG CTTATCGGTT TTTTTGACGA AGAAGAATCG ACAGCCTCCC CTGTTGCTCC GGAAGCCCGT GATAAAGAAG CTGAAACTTC GGATGAGGAT GACGGAGGAG AAGGTGGCAG TGATGAATTC GGCGAGAGCG GGCCTGACCC CCTCATTACT CAACAACACA TGGAAGAGCT TAAAAAGTTG TACGGCCGCT ATCAAAACGC CATTAAACGT TATGGCAAAA AAGCGCCGGC AACGCTCAAA CATCAAAAAG CGTTGGCTGA GTTGTTTTCA ACCTTTAAGC TTTCTATCAA GCAATTTAAT CGGCTCACCG GTCAATTACG TCGAATGCTA AGAGCCGCGC GCGCTCAAGA ACGTTTAATC ATGAGTTATT GCGTGGTCAA AGCGAAAACG CCACGTAAAA AATTTATTGC TTCCTTTCCG CATAATGAAA CCAACATGAA ATGGTTGGAA CAATACAAAA ATGAAAACAA AGAACAAGCG AAACGACTGG AAAAATACAG CAAAGAAATC TACCGCGCTC AACGAAACCT GGCGCAACTG GAAGAACAAA ACAATTTAAA CATTCAAGAA ATCAAAGAAA TTAATCGTCG CGTTGCCATC GGCGAGGCAA AATCACGCCG TGCTAAAAAA GAAATGATCG AAGCTAATTT ACGTCTGGTT ATTTCGATCG CAAAAAAATA CACCAATCGG GGGCTGCAAT TTCTGGATCT CATCCAGGAA GGAAACATTG GCTTAATGAA AGCCGTTGAC AAATTTGAAT ACCGCCGGGG TTATAAATTT TCAACCTATG CCACGTGGTG GATTCGCCAA GCAATTACGC GTTCGATCGC CGACCAAGCC CGGACTATCC GCATTCCTGT GCACATGATT GAAACGATCA ATAAACTCAA TCGCATCAGT CGACAAATCC TGCAAGAAAC CGGAATAGAA GCCACGCCCG AAGAACTGGG CCGACGGATG GATATGCCGG AAGAAAAAGT CAGGAAAGTT TTAAAGATCG CAAAAGAACC TATTTCCATG GAAACGCCTA TTGGCGAAGA TGAAGATTCT AACCTCGGTG ATTTTATTGA AGACATCAAC ATGGAATCAC CCGTGGATTT CGCCACTTCG GCCGGCCTCA TGGAAGCCAC GCGAGAAATT TTGTCTACGC TTACCCCGCG CGAAGCCAAA GTATTGCGGA TGCGTTTCGG TATCGACATG AATACTGATC ACACGCTGGA AGAAGTAGGC AAACAATTCG ACGTCACGCG AGAGCGGATT CGCCAAATTG AAGCCAAAGC CTTACGCAAA CTGCGCCACC CCAGCCGCGC TGAAAAATTA CACAGTTTCA TAGAAGTTGA GGAATAA
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Protein sequence | MPSRKKKSSV TKTKKKTTGK KARVTAKAKP SVKSKLKTVK RAPAKPKSVT VAKTKSKKEK AKVVTQPLPK TAEKKPSAPP SETQQPKIGE NAAESQRLGF GALLEEAKNK GYLVHEDLIN LLPNDYADPS QMEGIIGRLT EMGIKVFEIP PDADSLLLEE DTQSDDDEIN EDVAEVLATE TRTTDPVRMY MREMGSVELL TREGEIVIAK RIEEGIRQVM GAVVQYPELI EKFIKEYDTI VATEGRLSDL LIGFFDEEES TASPVAPEAR DKEAETSDED DGGEGGSDEF GESGPDPLIT QQHMEELKKL YGRYQNAIKR YGKKAPATLK HQKALAELFS TFKLSIKQFN RLTGQLRRML RAARAQERLI MSYCVVKAKT PRKKFIASFP HNETNMKWLE QYKNENKEQA KRLEKYSKEI YRAQRNLAQL EEQNNLNIQE IKEINRRVAI GEAKSRRAKK EMIEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD KFEYRRGYKF STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKLNRIS RQILQETGIE ATPEELGRRM DMPEEKVRKV LKIAKEPISM ETPIGEDEDS NLGDFIEDIN MESPVDFATS AGLMEATREI LSTLTPREAK VLRMRFGIDM NTDHTLEEVG KQFDVTRERI RQIEAKALRK LRHPSRAEKL HSFIEVEE
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