| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_4433 |
|---|
| Symbol | |
|---|
| ID | 5423623 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009720 |
|---|
| Strand | - |
|---|
| Start bp | 4919373 |
|---|
| End bp | 4920542 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640883697 |
|---|
| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| Protein accession | YP_001419311 |
|---|
| Protein GI | 154248353 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.000780962 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGCC TTTCCATCCT CGGGGCCACC GGCTCCATCG GCCACAGCGT CCGGACCCTC
CTGGCCGATG CGCCCGGCCT CTATGAGGTG GAAGCGGTCG CCGGCGGACG GGATGTCGCG
GCACTGGCCG AGACCGCCCG TGCGCTCAAT GCGCGCTTTG CCGCCATCGC CGATCCGGCG
GCGGGCAGGG CGCTCGCCGA AGCGCTGGCC GGCTCCGGCA TCGCCAGCGG CGCCGGTCCC
TCGGCCCTGA TCGAGGCGGC CCAGCGCGAG GCGGACGTGG TGGTAAGCGC CATCGTCGGC
GTGGCGGGCC TTGCGCCCAC CGTGGCTGCC TTCGCGCCGG GCCGGCGCAT CGCGCTGGCC
AACAAGGAAT GTCTGGTGGC CGCCGGTGCC TTCTTCATGG CCGAGGCGGC GCGGCAGGGC
ACCGAGATCC TGCCCGTGGA CAGCGAGCAC AACGCCATCT TCCAGGCGCT GGAGGCCGGC
CCACGCAAGG CGGTGGAGAA GATCACGCTC ACGGCCTCGG GCGGCCCGTT CCGGCTGAAA
AGCCGGGAGG AGATCGCGCG GGCACTGCCG AAGGATGCGC TCAAGCACCC CAACTGGTCG
ATGGGCGCCA AGATCACCAT CGATTCGGCC ACCCTCATGA ACAAGGGCCT CGAACTGATC
GAGGCGATGC ACCTGTTCGC CCTGCCGCCC GAGCGCTTCG ACGCGGTGGT GCATCCCGAG
TCGGTGGTCC ACGGGCTGGT GTCGTTTGTC GATGGGTCCG TGACAGCCGG CCTCGCCATG
CCCGACATGT GCGTGCCGAT CGCCCATTGC CTGGCGTTTC CGGATCGAAT CGTCACCTCC
TGCCGCCGGC TGGACCTGGT GGCCCTGGGC CGCCTCAGCT TCGAGGCGCC GGACGAGGCC
CGCTTCCCGG CGCTGGCGCT CGCCCGCGCC GCCATGGCCG CCGACGGGAT GGCCGCAACC
ATTCTGAACG CGGCCAACGA GGTGGCGGTC GCGGCGTATC TTGAGGGGCG GATCGGCTTT
TACGGCATCA CCGATACCGT GGCCGCGACG CTGGACCGCA TCAATGGCGG TCCTGCGCCC
GCCAGCGTCG CCGATGCCAT GGAGGCGGAT GCACAGGCGC GCCGTGCTGC TGCCGTGCTC
TTGCCTAAGT TTTCCGCAAA GGCATCTTAG
|
|---|
| Protein sequence | MKRLSILGAT GSIGHSVRTL LADAPGLYEV EAVAGGRDVA ALAETARALN ARFAAIADPA
AGRALAEALA GSGIASGAGP SALIEAAQRE ADVVVSAIVG VAGLAPTVAA FAPGRRIALA
NKECLVAAGA FFMAEAARQG TEILPVDSEH NAIFQALEAG PRKAVEKITL TASGGPFRLK
SREEIARALP KDALKHPNWS MGAKITIDSA TLMNKGLELI EAMHLFALPP ERFDAVVHPE
SVVHGLVSFV DGSVTAGLAM PDMCVPIAHC LAFPDRIVTS CRRLDLVALG RLSFEAPDEA
RFPALALARA AMAADGMAAT ILNAANEVAV AAYLEGRIGF YGITDTVAAT LDRINGGPAP
ASVADAMEAD AQARRAAAVL LPKFSAKAS
|
|---|
| |