| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_4365 |
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| Symbol | ligD |
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| ID | 5424627 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthobacter autotrophicus Py2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009720 |
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| Strand | - |
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| Start bp | 4836935 |
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| End bp | 4839595 |
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| Gene Length | 2661 bp |
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| Protein Length | 886 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640883627 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_001419243 |
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| Protein GI | 154248285 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGACGG ACAAGCTCTC TACCTACAAG GCGAAGCGCG ATTTCCAACT GACACAGGAG
CCGAGTGGCG GCGCGACAGC GAGCGCCTCG AACCGCCGCC GCTTCGTCAT CCAGAAGCAT
GACGCCACGC GGTTGCACTA CGATCTCCGA CTGGAACTCG ACGGCGTCTT CAAGTCCTGG
GCGGTGACCC GCGGTCCTTC CCTCGACCCC CACGACAAGC GCCTCGCCGT GGAAGTGGAA
GATCATCCGC TCGACTATGG CGACTTTGAA GGGACGATCC CCAAGGGCCA ATACGGCGGC
GGCACGGTCA TGCTCTGGGA CCGGGGCTAC TGGGAGCCGG AAGGCAAGAT GAGCCCCGAG
CAGGCGTTGG CGCAGGGCGA TCTCAAGTTC ACCCTCGACG GGGAGCGGCT GCATGGCAGC
TTCGTGCTGG TTCGCATGGC CAATGACCGC GACCGGGGCA AGCGCACAAA CTGGCTCCTG
ATGAAGCATC GCGACGCATT CGCGGTCGCG GCGAACGGCG CTGCGATCCT CGACGACTAC
GACACGTCCG TCGCGTCGGG CCGCACCATG GCGGCCATCG CCACGGGAAA GGGGCGCAAG
CCCAGCGTCT TCATGGTGCA GGGAGGCAAG GTTGAGTCCG ATGCGGTCTG GGACAGTCGC
ACAGGCCTCG CGGCCGAGGC GCGCAAGGCG CCGGCACGGC GAAGCAAGAC GCCGGACAAG
ATCGCGACCG CCGATCTCCC CGATTTCATC GCCCCGCAGC TGTGCCAGAC CGTGGAGCGC
CCGCCTTCTG CGGCCGGTTG GCTTCACGAA ATCAAGTTTG ACGGCTACCG CGTCCAGATG
CGGGTGCGTG ACGGCAAGGT GACCTTGAAG ACCCGCAAGG GTCTCGATTG GACCGCAAGA
TTTGCGGCCA TCGCGCGAGC CGCCGGCAAG CTGCCGGACG CGATCATTGA TGGCGAGATC
TGCGCCCTGG ACAACAACGG CGCCCCGGAT TTCGCGGCGA TTCAGGCAGC CCTTTCCGAG
GGCAAGACCG ATGGACTCGT CTATTTCGCC TTCGACCTCC TGTTCGAAGG GGGCGAGGAT
CTGCGGTCCT TGCCACTGGC CGAGCGCAAG GGTCGATTGC AGCAGTTCCT GATCGGTGCC
GGCGAGGATG CCCGGCTGCG GTTCGTCGAG CATTTCGACA CCGGCGGCGA GGCGGTGCTG
CGCTCGGCCT GCCGCCTCTC GCTTGAGGGC ATCGTGTCGA AGCGGGCGGA TGCGCCCTAC
GTCTCCGGGC GAACGGACAC CTGGGCAAAG TCCAAGTGCC GCGCGGGACA TGAGGTGGTC
ATCGGTGGCT ACGCGACCAC CGCCGGAAAA TTCCGTTCGC TCCTCGTTGG CGTCCACCGT
GGCGACAGCT TCGTCTATGT GGGGCGCGTC GGGACGGGGT ACAGCGCGGC GAAGGTCAGG
GGCCTCCTGC CGAAACTTCA GGCGGTCAAG AGGGCGAAAT CGCCCTTCAC CGGCATCTGC
GCGCCGAAGC AGGAGCCCGG CGTGGTCTGG CTCAAGCCCG AACTTGTCGC CGAGATCGAG
TTCGCCGGTT GGACATCCGA CGGCCTCGTC CGCCAGGCCT CTTTCAAGGC CTTGCGTGAG
GACAAGCCGG CGGACGAGGT GCAGGCCGAC ACGCCGGCTG CGCCCGAGAC CGCTGAGGTG
CCGCAGCCGG CGCCGCGCAA GTCGTCCGAG AGCACCGAGC CGTCGAAGTC AGCCCGCCGC
GGCGGCAAGG TCGACGTTAT GGGTGTCTTG ATCTCGAGCC CCGACAAGGT GCTCTGGCCG
GACGCCAACG ACGGCCGGCC AGTCACCAAG GAGGATCTGG CCCGCTATTA CGAAGCTGTC
GGCCCTTGGC TGATCGACCA TATCCGGGGC CGGCCGTGCT CCATCATCCG GGCGCCGGAT
GGGATCGGCG GCACGCAATT CTTCCAGCGC CACGCCATGC CGGGAACGTC CAGCCTGCTG
GAACTCGTGA CCGTCTTCGG CGACAAGAAG CCGTATCTTC AGATCGATCG CGTGGAAGGG
CTGGCCGCCG TCGCCCAGGT GGGCGCTTTG GAGTTGCATC CCTGGAATTG CGTGCCCCAG
CATCCGGAAG TGCCCGGTCG CCTCGTCTTC GATCTCGACC CTGGCCCGGA CGTGCCGTTC
TCGACGGTCG TCGAAGCCGC GCGGGAGATG CGCCAGCGGC TCGATGCACT CGGCCTGGTG
AGCTTCTGCA AGACGACCGG CGGAAAAGGC CTGCATGTCG TCACGCCGCT GGCGGTGTCC
AGGCGCAATC CGCTCTCCTG GCCGCAGGCC AAGGGCTTCG CGCGGGATGT CTGCCTGCAG
ATGGTGCGCG ACAATCCGGA GCTCTATCTG ATCAAGATGA CCAAGGCCCT GAGGACAGGC
CGTATCTTCC TCGACTATCT GCGCAACGAT CGCATGGCGA CCGCCGTGGC GCCGCTTTCT
CCCCGCGCTC GGCCCGGCGC CACCGTCTCC ATGCCCCTCA CCTGGGACGA GGTCACAGCC
GATCTCGACC CGAGGCGCTT CACGCTCCGC ACCGTTCCCG GGCTGTTGGC GAAAAGCGCG
CCCTGGGATG ACTACAGCGA CGGCGAGCGC CCGCTGGAGC CGGCCATCCG GCGGCTGGGC
AAGGCCATGA AGGCGGCGTG A
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| Protein sequence | MATDKLSTYK AKRDFQLTQE PSGGATASAS NRRRFVIQKH DATRLHYDLR LELDGVFKSW
AVTRGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPKGQYGG GTVMLWDRGY WEPEGKMSPE
QALAQGDLKF TLDGERLHGS FVLVRMANDR DRGKRTNWLL MKHRDAFAVA ANGAAILDDY
DTSVASGRTM AAIATGKGRK PSVFMVQGGK VESDAVWDSR TGLAAEARKA PARRSKTPDK
IATADLPDFI APQLCQTVER PPSAAGWLHE IKFDGYRVQM RVRDGKVTLK TRKGLDWTAR
FAAIARAAGK LPDAIIDGEI CALDNNGAPD FAAIQAALSE GKTDGLVYFA FDLLFEGGED
LRSLPLAERK GRLQQFLIGA GEDARLRFVE HFDTGGEAVL RSACRLSLEG IVSKRADAPY
VSGRTDTWAK SKCRAGHEVV IGGYATTAGK FRSLLVGVHR GDSFVYVGRV GTGYSAAKVR
GLLPKLQAVK RAKSPFTGIC APKQEPGVVW LKPELVAEIE FAGWTSDGLV RQASFKALRE
DKPADEVQAD TPAAPETAEV PQPAPRKSSE STEPSKSARR GGKVDVMGVL ISSPDKVLWP
DANDGRPVTK EDLARYYEAV GPWLIDHIRG RPCSIIRAPD GIGGTQFFQR HAMPGTSSLL
ELVTVFGDKK PYLQIDRVEG LAAVAQVGAL ELHPWNCVPQ HPEVPGRLVF DLDPGPDVPF
STVVEAAREM RQRLDALGLV SFCKTTGGKG LHVVTPLAVS RRNPLSWPQA KGFARDVCLQ
MVRDNPELYL IKMTKALRTG RIFLDYLRND RMATAVAPLS PRARPGATVS MPLTWDEVTA
DLDPRRFTLR TVPGLLAKSA PWDDYSDGER PLEPAIRRLG KAMKAA
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