| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_4274 |
|---|
| Symbol | |
|---|
| ID | 5421330 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009720 |
|---|
| Strand | + |
|---|
| Start bp | 4741372 |
|---|
| End bp | 4741866 |
|---|
| Gene Length | 495 bp |
|---|
| Protein Length | 164 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640883535 |
|---|
| Product | TonB system transport protein ExbD type-1 |
|---|
| Protein accession | YP_001419152 |
|---|
| Protein GI | 154248194 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0848] Biopolymer transport protein |
|---|
| TIGRFAM ID | [TIGR02803] TonB system transport protein ExbD, group 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0093154 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCCA AGCTCGACCA TGGCGGCGGG GACGACCTCG CCGAGAATCA CGAAATCAAC
GTCACGCCCT TCATCGACGT GATGCTGGTG CTGCTCATCA TCTTCATGGT GGCGGCCCCG
CTCGCCACGG TGGACGTGAA GGTGGACCTG CCGGCCTCCA ACGCCCAGCC CCAGCCGCGG
CCGGACAAGC CCCTGTTCCT CACCGTGAAG AAGGACCTGT CGCTGGCGCT GGGGGATGAT
GTGCTGGAGC GGTCTCTGCT CGGCCAGGCG CTCGACGGCA AGACCTCCGG CGACCGCCAG
CAGCGGGTGT TCGTGCGCGC CGACAAGGCG GTGCCCTTCG GCGACGTGAT GGAGGTGATG
AACCTGCTGC GCTCGGCCGG CTACCTCAAG GTGGCGCTGG TGGGCCTGGA AGGGGAGGCG
GCGCCCGTGC CCCCGGCACC CAATGCGCCA GCCACAGCCC CCGCGCCAGC GACCGCCCCG
GGGGCGCGGC CGTGA
|
|---|
| Protein sequence | MAAKLDHGGG DDLAENHEIN VTPFIDVMLV LLIIFMVAAP LATVDVKVDL PASNAQPQPR
PDKPLFLTVK KDLSLALGDD VLERSLLGQA LDGKTSGDRQ QRVFVRADKA VPFGDVMEVM
NLLRSAGYLK VALVGLEGEA APVPPAPNAP ATAPAPATAP GARP
|
|---|
| |