Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xaut_4262 |
Symbol | |
ID | 5423171 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthobacter autotrophicus Py2 |
Kingdom | Bacteria |
Replicon accession | NC_009720 |
Strand | + |
Start bp | 4727244 |
End bp | 4730750 |
Gene Length | 3507 bp |
Protein Length | 1168 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640883523 |
Product | transcription-repair coupling factor |
Protein accession | YP_001419140 |
Protein GI | 154248182 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.336252 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0120636 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAGCGTC CCCAGCTCCT TGCCGATGCG CTGGCCGAAG GCCGGCCGCT CATCCTCTCC CGCGTCGCGG ACGGCATGGA GGGCATGGTG GTGGCGGACC TCGCCCGCTC CCTGGCTGGG CGCAAGAACG CACCATGGCC GAGCCTCACC GTCATTTGCC GGGACGGCCA GCGTATGGCG GCCGTGGAGC GGGGCCTTGC CTTCTTCGCG CCGGAGCTGG AGGTGCTGAG CTTCCCCTCG TGGGATTGCC TGCCCTACGA CCGCGCCTCG CCCAACGCCT CCATCGTGGC CAGGCGCATG GCGACGCTGG CGAAGCTCGC CCGCATCAAG GGCGGCAATG CCAGCGTGCT GCTCACCACC GTGAACGCCA CGGTGCAGCG GGTGCCGGCC AAGGGGCTGG TGGCGGCGCA GTCGCTGGTG GCCGCGCCGG GCAATACCAT CGACCTTGAG GGCGTGACCC AATGGGCCGA GCAGAACGGC TTCCTGCGCA CCTCCACCGT GCGCGACACC GGCGAATATG CGGTACGCGG CGGCCTCATC GACCTGTTCC CGCCGGGGCT CGACGCGCCC ATCCGCCTCG ATTTCTTCGG CGACACGCTG GAGACCATCC GCGCCTTCGA TCCCGAGACC CAGCGCACCA CCGGTCAGGT CCGCTCGCTG GATCTGGTGC CCATGGCCGA GTTCCAGCTG ACCACCGAAA CCATGCGCCG CTTCCGCATG GCCTATGTGG CCGAGTTCGG CGCCGCTCGG AAGGGCGACA CCCTCTATGA GGCGGTGAGC GAAGGCCGCC GCCACGCCGG CATGGAACAT TGGCTGCCCC TGTTCCACGA GCGCATGGAC ACGCTGTTCG ACTACCTGGA AGGCGGCACG CTGCTGCTCG ACCCGCTGGC GGAAGAGGCC GGTGGCGAGC GCATCGCCCA GATCGCCGAT TATTATGACG CCCGAAAGGG CGGGCAGGAG CTGGGCGGCG GCACCATCTA CAATCCCCTG CCGGCGGACC GGCTCTATCT CTCCGGCCCG GAATGGAACA AGCGGCTGGC CCGCCACAGC CTCGCCCGGC TCAGCCCCTT CGCCGCGCCG GAGGGGGGCG ATAACCGCGT CATCGATCTC GGCGGCGTGC AGGGCCGCTC CTTCGCCGCC GAGCGGGCGG AGCCGGAGGC CAATGTCTTC GATGCCGCCA TCGCCCATGT TCGCGAGCTG CAGAAGTCCA GGAAGGTGAT CCTCGCCGGC TGGTCCGAGG GCTCGCGGGA GCGGCTGGGC ACGGTGCTGG CCGACCACGG GCTGAAGGGT CTCGCCGCCA TCTCCCGCTT CGACAGCCTC GCCGCCTTGC CCAAGACCCA GGCGGCACTG GCCGTGTTCG GGCTGGAGGC GGGGTTCGAG ACGCCGGACT TCGCCGTCAT CGGCGAGCAG GACATCCTCG GCGACCGGCT GGTGCGCCCC AAGCGCAAGG CCCGCCGCCC GCAGGACGTG CTCACGGAGC TGACCGCGCT CACCGCCGGC GACCTCGTGG TGCATGTGGA CCACGGCATC GGCCGCTTCA TCGGCCTGAA GACCGTGGAG GCCATGGGCG CCCCGCACGA CTGCCTGGAG ATCCACTACG CCGGCGGGGA CAAGCTGTTC CTGCCGGTGG AAAATCTCGA ACTCCTGAGC CGCTACGGCT CGGAGGACAC CGAGGCACAG CTGGACAAGC TGGGCGGCGG CGCGTGGCAG GCACGCAAGG CGCGGATGAA GAAGCGCATC CGCGAGATGG CGTCCGAACT CATCAAGATC GCCGCACAGC GCCAGCTTGG CGAGGCGCCC AAGCTGGTGC CGGCCATGGG CCTCTACGAC GAGTTCCGCG CCCGCTTCCC CTATGAGGAG ACCGACGACC AGGACGCCGC CATCGACGCG GTGCTGGACG ACCTCGCCTC CGGCCATCCC ATGGACCGGC TGATCTGCGG CGACGTGGGC TTCGGCAAGA CCGAGGTGGC CCTGCGCGCC GCCTTCGCGG TGGCGCTCTC CGGCAAGCAG GTGGCGGTGG TGGTGCCCAC CACGCTGCTC GCCCGCCAGC ATTTCAAGAC CTTCTCCGAG CGCTTCAAGG GCCTGCCGGT GAACGTGGCC CAGGCCTCGC GCATGGTGAC GGGCAAGGAC CTCACCGCCG TGAAGAAGGG CATCGCCGAC GGCACGGTGG ACATCGTGGT GGGCACCCAC GCCTTGCTCG GCAAGGCCAT CAGCTTCAAG GACCTCGGCC TCGTCATCGT GGACGAGGAG CAGCATTTCG GCGTCTCCCA CAAGGAGCGG CTGAAGCAGC TGCGCGCCGA GGTGCATGTG CTGACCCTCA CCGCTACCCC CATCCCCCGC ACCCTGCAGC TGGCCATGAC GGGTGTGCGC GAACTCTCCA TCATCGCCAC GCCTCCGGTG GACCGCCTCG CGGTGCGCAC CTTCATCACG CCGTTCGATC CGCTGGTGGT GCGCGAGGCG CTGCTGCGCG AGCGCTATCG CGGCGGCCAG AGCTTCTATG TGGTGCCGCG CATCGAGGAT CTTGCGGAGG TGCGCGAGTT CCTGGCCGCG TCCGTGCCCG AGGTGAAGGT GGCGGTGGCC CACGGCCAAC TCGCCGCCGG CGCGCTCGAA GACATCATGA CCGCCTTCTA CGACGGCCAG TACGACGTGC TGCTCTCCAC CACCATCGTG GAATCGGGCC TCGACGTGCC CAATGCCAAT ACGCTGATCG TGCACCGGGC CGACATGTTC GGCCTCGCCC AGCTCTACCA GTTGCGCGGC CGCGTGGGCC GGGCCAAGGC GCGGGCCTAT GCCATCTTCA CCGTGCCGGC GACCAAGCCC ATGACGGTGC AGGCGGAACG CCGCCTCAAG GTGCTGCAAT CGCTGGAGAC GCTGGGCGCC GGCTTCCAGC TGGCGAGCCA CGACCTCGAC ATCCGCGGCG CCGGCAATCT GCTGGGCGAC GAGCAGTCCG GCCACATCAA GGAAGTGGGT TACGAGCTGT ACCAGGAGAT GCTCCAGGAG GCGATCGCCC ACCTCAAGGC CGGCATCACC GACTATGTGG ACGACAAGTG GTCGCCCAAC ATCACCATCG GCATGCCGGT GCTGATTCCC GAGGACTATG TGGCCGACCT CCACGTGCGC CTCGCCCTCT ACCGCCGCCT CGCGGACATC CAGGACGACG GCGAGATCGA CGCCTTCGGG GCGGAACTGG TGGACCGCTT CGGCCCCACG CCGGAGGAGG TGGGCCAGCT TCTGAAGCTC ACCCAGATCA AGGCGCTGGC CCGCAAGGCC AATGTGGAGA AGGTGGATGC CGGCCCCAAG GGCGTGGTCC TGGGCTTCCG TGACAATGAG TTCGCCGACC CCTCGGGCCT GGTGAAGCTC ATCGGGCAGG AGGGTAACCA GGCCAAGGTG CGGCCCGACT TCAAGGTGGT GTTCCTGCGC GACTGGCCCA CCGCCGAGGC CCGGTTGAAG GGCACGCTGG TGGTGCTGAA GAAGCTCGCC GCGCTGGCCA GCAAGAAGGC GCTCTGA
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Protein sequence | MKRPQLLADA LAEGRPLILS RVADGMEGMV VADLARSLAG RKNAPWPSLT VICRDGQRMA AVERGLAFFA PELEVLSFPS WDCLPYDRAS PNASIVARRM ATLAKLARIK GGNASVLLTT VNATVQRVPA KGLVAAQSLV AAPGNTIDLE GVTQWAEQNG FLRTSTVRDT GEYAVRGGLI DLFPPGLDAP IRLDFFGDTL ETIRAFDPET QRTTGQVRSL DLVPMAEFQL TTETMRRFRM AYVAEFGAAR KGDTLYEAVS EGRRHAGMEH WLPLFHERMD TLFDYLEGGT LLLDPLAEEA GGERIAQIAD YYDARKGGQE LGGGTIYNPL PADRLYLSGP EWNKRLARHS LARLSPFAAP EGGDNRVIDL GGVQGRSFAA ERAEPEANVF DAAIAHVREL QKSRKVILAG WSEGSRERLG TVLADHGLKG LAAISRFDSL AALPKTQAAL AVFGLEAGFE TPDFAVIGEQ DILGDRLVRP KRKARRPQDV LTELTALTAG DLVVHVDHGI GRFIGLKTVE AMGAPHDCLE IHYAGGDKLF LPVENLELLS RYGSEDTEAQ LDKLGGGAWQ ARKARMKKRI REMASELIKI AAQRQLGEAP KLVPAMGLYD EFRARFPYEE TDDQDAAIDA VLDDLASGHP MDRLICGDVG FGKTEVALRA AFAVALSGKQ VAVVVPTTLL ARQHFKTFSE RFKGLPVNVA QASRMVTGKD LTAVKKGIAD GTVDIVVGTH ALLGKAISFK DLGLVIVDEE QHFGVSHKER LKQLRAEVHV LTLTATPIPR TLQLAMTGVR ELSIIATPPV DRLAVRTFIT PFDPLVVREA LLRERYRGGQ SFYVVPRIED LAEVREFLAA SVPEVKVAVA HGQLAAGALE DIMTAFYDGQ YDVLLSTTIV ESGLDVPNAN TLIVHRADMF GLAQLYQLRG RVGRAKARAY AIFTVPATKP MTVQAERRLK VLQSLETLGA GFQLASHDLD IRGAGNLLGD EQSGHIKEVG YELYQEMLQE AIAHLKAGIT DYVDDKWSPN ITIGMPVLIP EDYVADLHVR LALYRRLADI QDDGEIDAFG AELVDRFGPT PEEVGQLLKL TQIKALARKA NVEKVDAGPK GVVLGFRDNE FADPSGLVKL IGQEGNQAKV RPDFKVVFLR DWPTAEARLK GTLVVLKKLA ALASKKAL
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