| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_4262 |
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| Symbol | |
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| ID | 5423171 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthobacter autotrophicus Py2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009720 |
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| Strand | + |
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| Start bp | 4727244 |
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| End bp | 4730750 |
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| Gene Length | 3507 bp |
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| Protein Length | 1168 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640883523 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001419140 |
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| Protein GI | 154248182 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.336252 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0120636 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGCGTC CCCAGCTCCT TGCCGATGCG CTGGCCGAAG GCCGGCCGCT CATCCTCTCC
CGCGTCGCGG ACGGCATGGA GGGCATGGTG GTGGCGGACC TCGCCCGCTC CCTGGCTGGG
CGCAAGAACG CACCATGGCC GAGCCTCACC GTCATTTGCC GGGACGGCCA GCGTATGGCG
GCCGTGGAGC GGGGCCTTGC CTTCTTCGCG CCGGAGCTGG AGGTGCTGAG CTTCCCCTCG
TGGGATTGCC TGCCCTACGA CCGCGCCTCG CCCAACGCCT CCATCGTGGC CAGGCGCATG
GCGACGCTGG CGAAGCTCGC CCGCATCAAG GGCGGCAATG CCAGCGTGCT GCTCACCACC
GTGAACGCCA CGGTGCAGCG GGTGCCGGCC AAGGGGCTGG TGGCGGCGCA GTCGCTGGTG
GCCGCGCCGG GCAATACCAT CGACCTTGAG GGCGTGACCC AATGGGCCGA GCAGAACGGC
TTCCTGCGCA CCTCCACCGT GCGCGACACC GGCGAATATG CGGTACGCGG CGGCCTCATC
GACCTGTTCC CGCCGGGGCT CGACGCGCCC ATCCGCCTCG ATTTCTTCGG CGACACGCTG
GAGACCATCC GCGCCTTCGA TCCCGAGACC CAGCGCACCA CCGGTCAGGT CCGCTCGCTG
GATCTGGTGC CCATGGCCGA GTTCCAGCTG ACCACCGAAA CCATGCGCCG CTTCCGCATG
GCCTATGTGG CCGAGTTCGG CGCCGCTCGG AAGGGCGACA CCCTCTATGA GGCGGTGAGC
GAAGGCCGCC GCCACGCCGG CATGGAACAT TGGCTGCCCC TGTTCCACGA GCGCATGGAC
ACGCTGTTCG ACTACCTGGA AGGCGGCACG CTGCTGCTCG ACCCGCTGGC GGAAGAGGCC
GGTGGCGAGC GCATCGCCCA GATCGCCGAT TATTATGACG CCCGAAAGGG CGGGCAGGAG
CTGGGCGGCG GCACCATCTA CAATCCCCTG CCGGCGGACC GGCTCTATCT CTCCGGCCCG
GAATGGAACA AGCGGCTGGC CCGCCACAGC CTCGCCCGGC TCAGCCCCTT CGCCGCGCCG
GAGGGGGGCG ATAACCGCGT CATCGATCTC GGCGGCGTGC AGGGCCGCTC CTTCGCCGCC
GAGCGGGCGG AGCCGGAGGC CAATGTCTTC GATGCCGCCA TCGCCCATGT TCGCGAGCTG
CAGAAGTCCA GGAAGGTGAT CCTCGCCGGC TGGTCCGAGG GCTCGCGGGA GCGGCTGGGC
ACGGTGCTGG CCGACCACGG GCTGAAGGGT CTCGCCGCCA TCTCCCGCTT CGACAGCCTC
GCCGCCTTGC CCAAGACCCA GGCGGCACTG GCCGTGTTCG GGCTGGAGGC GGGGTTCGAG
ACGCCGGACT TCGCCGTCAT CGGCGAGCAG GACATCCTCG GCGACCGGCT GGTGCGCCCC
AAGCGCAAGG CCCGCCGCCC GCAGGACGTG CTCACGGAGC TGACCGCGCT CACCGCCGGC
GACCTCGTGG TGCATGTGGA CCACGGCATC GGCCGCTTCA TCGGCCTGAA GACCGTGGAG
GCCATGGGCG CCCCGCACGA CTGCCTGGAG ATCCACTACG CCGGCGGGGA CAAGCTGTTC
CTGCCGGTGG AAAATCTCGA ACTCCTGAGC CGCTACGGCT CGGAGGACAC CGAGGCACAG
CTGGACAAGC TGGGCGGCGG CGCGTGGCAG GCACGCAAGG CGCGGATGAA GAAGCGCATC
CGCGAGATGG CGTCCGAACT CATCAAGATC GCCGCACAGC GCCAGCTTGG CGAGGCGCCC
AAGCTGGTGC CGGCCATGGG CCTCTACGAC GAGTTCCGCG CCCGCTTCCC CTATGAGGAG
ACCGACGACC AGGACGCCGC CATCGACGCG GTGCTGGACG ACCTCGCCTC CGGCCATCCC
ATGGACCGGC TGATCTGCGG CGACGTGGGC TTCGGCAAGA CCGAGGTGGC CCTGCGCGCC
GCCTTCGCGG TGGCGCTCTC CGGCAAGCAG GTGGCGGTGG TGGTGCCCAC CACGCTGCTC
GCCCGCCAGC ATTTCAAGAC CTTCTCCGAG CGCTTCAAGG GCCTGCCGGT GAACGTGGCC
CAGGCCTCGC GCATGGTGAC GGGCAAGGAC CTCACCGCCG TGAAGAAGGG CATCGCCGAC
GGCACGGTGG ACATCGTGGT GGGCACCCAC GCCTTGCTCG GCAAGGCCAT CAGCTTCAAG
GACCTCGGCC TCGTCATCGT GGACGAGGAG CAGCATTTCG GCGTCTCCCA CAAGGAGCGG
CTGAAGCAGC TGCGCGCCGA GGTGCATGTG CTGACCCTCA CCGCTACCCC CATCCCCCGC
ACCCTGCAGC TGGCCATGAC GGGTGTGCGC GAACTCTCCA TCATCGCCAC GCCTCCGGTG
GACCGCCTCG CGGTGCGCAC CTTCATCACG CCGTTCGATC CGCTGGTGGT GCGCGAGGCG
CTGCTGCGCG AGCGCTATCG CGGCGGCCAG AGCTTCTATG TGGTGCCGCG CATCGAGGAT
CTTGCGGAGG TGCGCGAGTT CCTGGCCGCG TCCGTGCCCG AGGTGAAGGT GGCGGTGGCC
CACGGCCAAC TCGCCGCCGG CGCGCTCGAA GACATCATGA CCGCCTTCTA CGACGGCCAG
TACGACGTGC TGCTCTCCAC CACCATCGTG GAATCGGGCC TCGACGTGCC CAATGCCAAT
ACGCTGATCG TGCACCGGGC CGACATGTTC GGCCTCGCCC AGCTCTACCA GTTGCGCGGC
CGCGTGGGCC GGGCCAAGGC GCGGGCCTAT GCCATCTTCA CCGTGCCGGC GACCAAGCCC
ATGACGGTGC AGGCGGAACG CCGCCTCAAG GTGCTGCAAT CGCTGGAGAC GCTGGGCGCC
GGCTTCCAGC TGGCGAGCCA CGACCTCGAC ATCCGCGGCG CCGGCAATCT GCTGGGCGAC
GAGCAGTCCG GCCACATCAA GGAAGTGGGT TACGAGCTGT ACCAGGAGAT GCTCCAGGAG
GCGATCGCCC ACCTCAAGGC CGGCATCACC GACTATGTGG ACGACAAGTG GTCGCCCAAC
ATCACCATCG GCATGCCGGT GCTGATTCCC GAGGACTATG TGGCCGACCT CCACGTGCGC
CTCGCCCTCT ACCGCCGCCT CGCGGACATC CAGGACGACG GCGAGATCGA CGCCTTCGGG
GCGGAACTGG TGGACCGCTT CGGCCCCACG CCGGAGGAGG TGGGCCAGCT TCTGAAGCTC
ACCCAGATCA AGGCGCTGGC CCGCAAGGCC AATGTGGAGA AGGTGGATGC CGGCCCCAAG
GGCGTGGTCC TGGGCTTCCG TGACAATGAG TTCGCCGACC CCTCGGGCCT GGTGAAGCTC
ATCGGGCAGG AGGGTAACCA GGCCAAGGTG CGGCCCGACT TCAAGGTGGT GTTCCTGCGC
GACTGGCCCA CCGCCGAGGC CCGGTTGAAG GGCACGCTGG TGGTGCTGAA GAAGCTCGCC
GCGCTGGCCA GCAAGAAGGC GCTCTGA
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| Protein sequence | MKRPQLLADA LAEGRPLILS RVADGMEGMV VADLARSLAG RKNAPWPSLT VICRDGQRMA
AVERGLAFFA PELEVLSFPS WDCLPYDRAS PNASIVARRM ATLAKLARIK GGNASVLLTT
VNATVQRVPA KGLVAAQSLV AAPGNTIDLE GVTQWAEQNG FLRTSTVRDT GEYAVRGGLI
DLFPPGLDAP IRLDFFGDTL ETIRAFDPET QRTTGQVRSL DLVPMAEFQL TTETMRRFRM
AYVAEFGAAR KGDTLYEAVS EGRRHAGMEH WLPLFHERMD TLFDYLEGGT LLLDPLAEEA
GGERIAQIAD YYDARKGGQE LGGGTIYNPL PADRLYLSGP EWNKRLARHS LARLSPFAAP
EGGDNRVIDL GGVQGRSFAA ERAEPEANVF DAAIAHVREL QKSRKVILAG WSEGSRERLG
TVLADHGLKG LAAISRFDSL AALPKTQAAL AVFGLEAGFE TPDFAVIGEQ DILGDRLVRP
KRKARRPQDV LTELTALTAG DLVVHVDHGI GRFIGLKTVE AMGAPHDCLE IHYAGGDKLF
LPVENLELLS RYGSEDTEAQ LDKLGGGAWQ ARKARMKKRI REMASELIKI AAQRQLGEAP
KLVPAMGLYD EFRARFPYEE TDDQDAAIDA VLDDLASGHP MDRLICGDVG FGKTEVALRA
AFAVALSGKQ VAVVVPTTLL ARQHFKTFSE RFKGLPVNVA QASRMVTGKD LTAVKKGIAD
GTVDIVVGTH ALLGKAISFK DLGLVIVDEE QHFGVSHKER LKQLRAEVHV LTLTATPIPR
TLQLAMTGVR ELSIIATPPV DRLAVRTFIT PFDPLVVREA LLRERYRGGQ SFYVVPRIED
LAEVREFLAA SVPEVKVAVA HGQLAAGALE DIMTAFYDGQ YDVLLSTTIV ESGLDVPNAN
TLIVHRADMF GLAQLYQLRG RVGRAKARAY AIFTVPATKP MTVQAERRLK VLQSLETLGA
GFQLASHDLD IRGAGNLLGD EQSGHIKEVG YELYQEMLQE AIAHLKAGIT DYVDDKWSPN
ITIGMPVLIP EDYVADLHVR LALYRRLADI QDDGEIDAFG AELVDRFGPT PEEVGQLLKL
TQIKALARKA NVEKVDAGPK GVVLGFRDNE FADPSGLVKL IGQEGNQAKV RPDFKVVFLR
DWPTAEARLK GTLVVLKKLA ALASKKAL
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