Gene Xaut_4007 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagXaut_4007 
Symbol 
ID5423148 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXanthobacter autotrophicus Py2 
KingdomBacteria 
Replicon accessionNC_009720 
Strand
Start bp4434900 
End bp4436879 
Gene Length1980 bp 
Protein Length659 aa 
Translation table11 
GC content66% 
IMG OID640883261 
Productconjugal transfer coupling protein TraG 
Protein accessionYP_001418886 
Protein GI154247928 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3505] Type IV secretory pathway, VirD4 components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.521585 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGCGA CCAAGATCCT CTGGGGCCAG ATCCTCGCAG TCTTCGCCAT CGTGCTCGCC 
ACCACCTGGG GGGCGACGGA ATATGTCGCC TGGCGGCTGG GCTTCCAGGA CCAACTCGGC
TCACCCTGGT TCGTGCTGGG GTACTGGCCC GTCTATCACC CGCCGGCCTT CTTCTGGTGG
TGGTATTTCT ACGATGCCTA TGCGCCGGAG ATTTTCACAG AAGGCGCCTT CATCGCGGCC
TCGGGCGGGT TCCTGTCCAT TGCGATCGCC ATCGGCCTGT CGGTCTGGCG GGCCCGGGAG
GCGAAGCGGG TCGAGACCTA CGGTTCCGCC CGCTGGGCCG AGCCGGACGA GATCCGTTCA
GCCGGTCTTC TCGGATCCGA CGGGGTAGTG CTCGGCCGCC ATGGAGGGGA CTATCTGCGC
CATGACGGGC CCGAGCACGT CCTGTGCTTC GCGCCCACCC GGTCGGGCAA GGGCGTGGGC
CTCGTCGTCC CATCGCTCCT CACCTGGCCA GGCTCTGCCA TCGTCCACGA CATCAAGGGC
GAAAACTGGC AGCTCACCGC CGGCTTCCGG GCACGGCACG GGCGCGTGTT GCTGTTCGAC
CCCACCAATG TGAAATCGGC CGCTTACAAT CCGCTGCTGG AGGTCCGCCG CGGGGAGTGG
GAGGTCCGCG ACGTCCAGAA CATCGCCGAT ATCCTGGTCG ACCCTGAGGG CTCACTGGAA
AAGCGCAACC ACTGGGAAAA GACCAGCCAC GCTCTGCTCG TCGGCGCCAT TCTCCATGTG
CTCTATGCCG AGCGCGACAA GACCCTCGCC GGCGTCGCCG TCTTCCTCTC CGACCCCAGG
CGCCCCATCG AGGCGACACT CGCCGCCATG ATGACGACGC CGCACCTCGG CGAGACGGGT
CCTCATCCGG TGATCGCCAG CGCGGCACGG GAGCTTCTCA ATAAGTCGGA GAACGAGCGC
TCCGGCGTTC TTTCCACCGC CATGTCCTTC CTCGGGCTCT ATCGCGATCC GGTGGTCGCC
AAGGTGACCC GGCGCTGCGA TTGGCGCATC GCCGACCTTG TAGCGCACCG GCAGCCGACC
ACCCTCTATC TCGTCGTGCC GCCGTCCGAC ATCAACCGCA CCAAGCCTCT GATCCGCCTG
ATCCTGAACC AGGTCGGGCG TCGCCTCACC GAGGACCTGC AGGCGAAGGC CGGCCGCCAT
CGGCTCCTCC TGATGCTGGA CGAGTTTCCG GCGCTGGGGC GGCTCGACTT CTTCGAGAGC
GCCCTCGCAT TCATGGCGGG CTACGAGCTC AAGAGCTTCC TGATCGCGCA GAGCCTGAAC
CAGATCGAGA AGGCCTATGG CCCGAACAAT TCGATCCTCG ACAACTGCCA TGTGCGGGTG
AGCTTTGCCA CCAATGACGA GCGCACCGCC AAGCGTGTCT CCGACGCCCT CGGCACCGCC
ACCGAGATGA AGGCCATGAA GAACTATGCC GGCCACCGGC TCTCGCCCTG GCTCGGCCAC
CTGATGGTGT CGCGCTCGGA GACGGCCCGC CCGCTCCTCA CGCCGGGTGA GGTGATGCAG
CTTCCACCCG CCGACGAGAT CGTCATGGTC GCCGGCACGC CGCCGATCCG GGCGAAGAAG
GCGCGGTACT ATGAGGATGC GCGCTTCCGG GAGCGAATCC TGCAGCCACC TCTGCTTGCA
GAACCCAACG AGCAGCGCGC CGACGACTGG ACCGTGTTGC CGTTGCCCGC ACCCTCGCAA
CTGAGCCTGA TGGTGCAGGG AAGGGATGAT GAGGACACGA CCGGGTCGGA GCGCCGACAC
CAGCCGGAGC TGGCTCGGGT GGCTTCGGTC GAGGAGCTTG CATTACCGCA GAACGAGTTC
GAGATCGACC TCGCGGACGA GAGTGAGGAC GACGTCGCCC GAAACAGCCG CATGACGCGC
GTCATGCAGG GTGTGGCGCG TCAGGTCTCG CTCGACCCCC GCGACGGCAT GGAGCTGTGA
 
Protein sequence
MSATKILWGQ ILAVFAIVLA TTWGATEYVA WRLGFQDQLG SPWFVLGYWP VYHPPAFFWW 
WYFYDAYAPE IFTEGAFIAA SGGFLSIAIA IGLSVWRARE AKRVETYGSA RWAEPDEIRS
AGLLGSDGVV LGRHGGDYLR HDGPEHVLCF APTRSGKGVG LVVPSLLTWP GSAIVHDIKG
ENWQLTAGFR ARHGRVLLFD PTNVKSAAYN PLLEVRRGEW EVRDVQNIAD ILVDPEGSLE
KRNHWEKTSH ALLVGAILHV LYAERDKTLA GVAVFLSDPR RPIEATLAAM MTTPHLGETG
PHPVIASAAR ELLNKSENER SGVLSTAMSF LGLYRDPVVA KVTRRCDWRI ADLVAHRQPT
TLYLVVPPSD INRTKPLIRL ILNQVGRRLT EDLQAKAGRH RLLLMLDEFP ALGRLDFFES
ALAFMAGYEL KSFLIAQSLN QIEKAYGPNN SILDNCHVRV SFATNDERTA KRVSDALGTA
TEMKAMKNYA GHRLSPWLGH LMVSRSETAR PLLTPGEVMQ LPPADEIVMV AGTPPIRAKK
ARYYEDARFR ERILQPPLLA EPNEQRADDW TVLPLPAPSQ LSLMVQGRDD EDTTGSERRH
QPELARVASV EELALPQNEF EIDLADESED DVARNSRMTR VMQGVARQVS LDPRDGMEL