Gene Xaut_3138 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagXaut_3138 
Symbol 
ID5421352 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXanthobacter autotrophicus Py2 
KingdomBacteria 
Replicon accessionNC_009720 
Strand
Start bp3483210 
End bp3484358 
Gene Length1149 bp 
Protein Length382 aa 
Translation table11 
GC content69% 
IMG OID640882384 
Productribonuclease D 
Protein accessionYP_001418025 
Protein GI154247067 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0349] Ribonuclease D 
TIGRFAM ID[TIGR01388] ribonuclease D 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.340789 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCCGA TCTCCTCGAC CGAGGCGCTG GCAGCGGCCT GCGAACGCCT CGCCCGCCAC 
CCTTTCGTCA CCGTCGACAC GGAATTCCTA AGGGAAACCA CGTTCTGGCC GAAGCTCTGC
GTCGTGCAGG TCGCCTCGCC GGAAGAAGCC GTGCTCATCG ACGCGCTGGC GGACGGGCTC
GATCTCGCCC CCTTCTACCG GCTCATGGCC AATGAGCGGG TGATGAAGGT GTTCCACGCC
GGCCGGCAGG ACATCGAGAT CATCTGGCAC CAGGCCCGAC TCATCCCGCA TCCGGTGTTC
GACACCCAGG TGGCGGCGAT GGTGCTCGGC TATGGCGACA GCATCTCTTA TGACCAGCTG
GTTCAGCGCG TCACGGGCCA CGCCCTCGAC AAGTCGTCGC GCTTCACCGA CTGGTCGCGC
CGGCCGCTGA GCCAGGCGCA GATCGTCTAT GCCGTGGCCG ACGTCACCCA TCTGCGCGAC
ATCTACATCA AGCTGACAAC GGACCTGGAG ACGCGGGGCC GCGCGGAGTG GGTGGGCGAG
GAAATGCACG TCCTCACCTC CCCCGCCACC TACGAGCAGC ACCCGGACAG CGCCTGGGAG
CGGCTGAAGT CCCGCGTGCG CAAGCCGCGC GAGCTGGCCG TGCTGGTGGA GGTGGCCGCC
TGGCGCGAGC GCGAGGCCCA GACCCGCGAC CTGCCGCGCG GCCGCGTGAT CAAGGACGAG
GTGATCGGCG AGATCGCGGT GCAGCAGCCG CAGACGCCGG AGAAGCTGGC CGAGCTGCGC
TCCCTGCCCA AGGGCTTCGA ACGCTCGCGC TACGGCGAGG CGGTGCTGGA GGCGGTGCGT
CGGGGCGTCG CCCGAGACCC CAAGACCCTG CCGCGCATCG AGCGCGACAA GCCCTTGCCC
AACGGTGCCA GCGCCACGGT GGAACTGCTG AAGGTGCTGC TGCGCATGAC GGCGGAGCAG
AATGCGGTGG CCGCCAAGGT GATCGCCACC ACCGAGGACC TGGAGCGTAT CGCGGTCAGC
GACGAAGCCG ACGTGCAGGC GCTGAAGGGC TGGCGCCGCG AGCTGTTCGG CGAGCGCGCC
CTGGCCCTGA AGGCCGGCCG CCTGGCGCTG GCGGTGAACC ACGGCCGCGT CATTGCGGTG
GAGAAATAA
 
Protein sequence
MDPISSTEAL AAACERLARH PFVTVDTEFL RETTFWPKLC VVQVASPEEA VLIDALADGL 
DLAPFYRLMA NERVMKVFHA GRQDIEIIWH QARLIPHPVF DTQVAAMVLG YGDSISYDQL
VQRVTGHALD KSSRFTDWSR RPLSQAQIVY AVADVTHLRD IYIKLTTDLE TRGRAEWVGE
EMHVLTSPAT YEQHPDSAWE RLKSRVRKPR ELAVLVEVAA WREREAQTRD LPRGRVIKDE
VIGEIAVQQP QTPEKLAELR SLPKGFERSR YGEAVLEAVR RGVARDPKTL PRIERDKPLP
NGASATVELL KVLLRMTAEQ NAVAAKVIAT TEDLERIAVS DEADVQALKG WRRELFGERA
LALKAGRLAL AVNHGRVIAV EK