| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_2878 |
|---|
| Symbol | |
|---|
| ID | 5422126 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009720 |
|---|
| Strand | + |
|---|
| Start bp | 3203921 |
|---|
| End bp | 3204904 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640882132 |
|---|
| Product | P-type conjugative transfer ATPase TrbB |
|---|
| Protein accession | YP_001417774 |
|---|
| Protein GI | 154246816 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
|---|
| TIGRFAM ID | [TIGR02782] P-type conjugative transfer ATPase TrbB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0715794 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGTTT CTCACCAGCA ATCAGAGGCG ATCCTTCGAG GCGCGCGCAT GTTGCGCACG
GCCCTCGGCC CCGCCATCGC CGGATTCCTG GAAGACCCGT CGATCGTCGA GGTGATGCTC
AATCCCGATG GGCGGCTCTG GATCGACCGG CTGTCCGAGG GACTCTCCGA TACCGGAGCG
CGCCTGTCGC CCGCGGACGG CGAGCGCATC GTCCGCCTGG TCGCGCATCA TGTCGGCGCC
GAGGTTCATT CCGGTTCACC GCGCGTTTCG GCCGAGTTGC CCGAGACGGG GGAGCGCTTC
GAAGGCCTTC TGCCGCCCGT CGTCGCCGCG CCGGCATTCG CGATCCGCAA ACCTGCCGTC
GCCGTCTTCA CGCTCGCTGA CTATGTCGCC GCCGAGATCA TGTCCGCCGA ACAGGCGGAG
GTGCTCCGCC GCGCCGTCGC GGACCGCCGC AACATCCTCG TCGCCGGCGG CACCTCGACC
GGCAAGACCA CGCTCACCAA CGCCTTGCTC GCCGAGGTAT CGAAGACCTT CGACCGCGTG
GTTCTGATCG AGGACACGCG CGAGCTGCAA TGCGCCGCGC CCAACCTCGT AGCCATGCGC
ACCAAGGATG GCGTCGCATC GCTGTCCGAT CTCGTCCGCT CCTCGCTTCG CTTGCGCCCT
GATCGCATTC CGATCGGAGA GGTGCGCGGC GCCGAGGCGC TGGATTTGCT CAAGGCCTGG
GGGACGGGCC ACCCGGGCGG CATCGGCACG ATCCACGCCG GCACCGCGCT CGGCGCGCTG
CGCCGCCTTG AGCAACTCAT TCAGGAAGCC GTCGTCACCG TCCCGCGCGC GCTGATCGCC
GAGACCATCG ATCTCGTCGC GGTGCTCAGC GGTCGCGGCT CGACCCGTCG CCTCGCCGAA
CTCGCCCGCG TCGAAGGCCT ACAGCCGGAC GGCGACTACC GCGTCATCCC CGCAACCCAG
CCCGCCCCAG GAGAACCCGA ATGA
|
|---|
| Protein sequence | MAVSHQQSEA ILRGARMLRT ALGPAIAGFL EDPSIVEVML NPDGRLWIDR LSEGLSDTGA
RLSPADGERI VRLVAHHVGA EVHSGSPRVS AELPETGERF EGLLPPVVAA PAFAIRKPAV
AVFTLADYVA AEIMSAEQAE VLRRAVADRR NILVAGGTST GKTTLTNALL AEVSKTFDRV
VLIEDTRELQ CAAPNLVAMR TKDGVASLSD LVRSSLRLRP DRIPIGEVRG AEALDLLKAW
GTGHPGGIGT IHAGTALGAL RRLEQLIQEA VVTVPRALIA ETIDLVAVLS GRGSTRRLAE
LARVEGLQPD GDYRVIPATQ PAPGEPE
|
|---|
| |