| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_2452 |
|---|
| Symbol | |
|---|
| ID | 5424249 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009720 |
|---|
| Strand | + |
|---|
| Start bp | 2739150 |
|---|
| End bp | 2740436 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640881705 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001417351 |
|---|
| Protein GI | 154246393 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.591296 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCGC TTCCGCCCTT CGATCCGGCG CCGGCCGCCA CCCACCGCGA CCCCGCGCCC
AAGCTGCCCG CGCGCCCGTC GCGCCGGCTC TGGCGCTGGG GCGCGCTCGC GGTGCTGCTT
GCGGTCGCGG CCTATGGCTA TTCCCGATTC ACCGCGCCCG ATCCCGGCAG CGCGCTGATG
ACTGCTGTCG TCACCCGGGG CGACGTGGCC GAGACCGTGC TCGCCAGCGG CACGCTGAAG
CCGTCGCGGC TGGTGGCGGT GGGCGCGCAG GCGTCCGGCC GCATCACCTC GGTCAAGGTG
CGGCTGGGGC AGAAGGTGAC GGCCGGCGAC CTCGTGGCCG AGATCGATTC CGTCACCCAG
CAGAACGCGC TCGGCACGGC GGAGGCGTCG CTCGCCAATG TCCGCGCCCA GAAGGCGGAG
AAGGAGGCGA CCCTCGGCCT CAACGAGCAG ACGCTGGCCC GCCAGCGCAC CATGGTGGCG
CAGAAGGCGG TGTCGCAGGC CGATTTCGAG ACCGCCGAGG CCGCCGTGAA GGTCACCCGC
GCCCAGCTCG CGGCGCTGGA GGCGCAGATC GTGGAGGCCG CCATCGCGGT GGAGACGGCC
CGCGCCAACC TCGGCTACAC CCGCATCACC GCCCCCATCG ACGGCACGGT GCTCGCCCTC
GTGGCCCAGG AGGGCCAGAC GGTGAACGCG ACCCAGTCGG CGCCCACCAT CGTCATCCTC
GGCGCCCTCG ACGTGATGAC GGTGCGGGCG GAAATCTCCG AAGCCGACAT CGTGAAGGTG
GCACCAAGCA TGTCCCTGTG GTTCACCATC CTCGGCGCCC CGGACATCCG CTATGACGGC
AAGCTCGCGT TCATCGAGCC GGCGCCGGAA ACGATCAAGA CCGACAGCAG CTTCACCACC
ACGAGCACAT CTTCTTCTTC GTCGTCTTCT TCCTCGTCCA GTTCTTCCTC AGCCATCTAC
TACATGGGCC TGTTCGACGT GCCGAACCCG GAGGGGCGGC TGCGCACCTA CATGACGGCG
GAGGTGCACA TCGTCCTCGG CGAGGCCAAA GGGGTGCTCA CCGTTCCCGC CACCGCGCTC
GAGCGCGACG GGGCGGGCGA CAGCGTGCGC GTGGTGGAGC CGGACGGCAC GCTGGCGCGG
CGCAAGGTGG AGGTGGGTCT CAACGACAAG ATCACCGCCG AGATCCGCTC CGGGCTGAAG
GCGGGCGAGC GGGTGGTGAC CGGCGAGAAG GTGCAGGGCG CCGCCACGGC CTCGCGCATG
CCCGGCCCGC CGCCCATGGG GTTCTAG
|
|---|
| Protein sequence | MNALPPFDPA PAATHRDPAP KLPARPSRRL WRWGALAVLL AVAAYGYSRF TAPDPGSALM
TAVVTRGDVA ETVLASGTLK PSRLVAVGAQ ASGRITSVKV RLGQKVTAGD LVAEIDSVTQ
QNALGTAEAS LANVRAQKAE KEATLGLNEQ TLARQRTMVA QKAVSQADFE TAEAAVKVTR
AQLAALEAQI VEAAIAVETA RANLGYTRIT APIDGTVLAL VAQEGQTVNA TQSAPTIVIL
GALDVMTVRA EISEADIVKV APSMSLWFTI LGAPDIRYDG KLAFIEPAPE TIKTDSSFTT
TSTSSSSSSS SSSSSSSAIY YMGLFDVPNP EGRLRTYMTA EVHIVLGEAK GVLTVPATAL
ERDGAGDSVR VVEPDGTLAR RKVEVGLNDK ITAEIRSGLK AGERVVTGEK VQGAATASRM
PGPPPMGF
|
|---|
| |