Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Xaut_1680 |
Symbol | rplD |
ID | 5424569 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthobacter autotrophicus Py2 |
Kingdom | Bacteria |
Replicon accession | NC_009720 |
Strand | + |
Start bp | 1897902 |
End bp | 1898522 |
Gene Length | 621 bp |
Protein Length | 206 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640880926 |
Product | 50S ribosomal protein L4 |
Protein accession | YP_001416582 |
Protein GI | 154245624 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0088] Ribosomal protein L4 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.097299 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0000499421 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGAAATCA CCGTCAAGAC GCTCGACGGC ATCGAGGCCG GTTCCGTGAC CCTGTCGGAC GAGATCTTCG GTCTCGAGCC GCGGGCGGAC ATCCTGCACC GGTGCGTGAC CTGGCAGCTG TCGCGCCGTC AGGCCGGCAC CCACCGCACC AAGGGCCGTT CGGAGATCAA CCGCACGTCC AAGAAGATGT ACAAGCAGAA GGGCACCGGC AACGCCCGTC ACGGCGCCGC CTCCGCTCCG CAGTTCCGCG GCGGTGGTCG TGCCTTCGGT CCGGTCGTGC GCTCCCACGC CATCGACCTG CCGAAGAAGG TGCGCGCGCT CGCCCTGAAG CATGCCCTGT CTTCGAAGGC CAAGGCGGCG CAGATCATCG TGCTCGACAA GGTCTCCCTT GACGATCCCA AGACGAAGGC GCTCAAGGAG CACTTCGCCA AGCTGGGTCT CGAATCGGTC CTGATCGTGG ACGGTGCCCA GGTGGAGCAG AATGTGGCGC TCGCGGCGCG CAACCTGCCC TATGTGGACG TGCTCCCGAT CCAGGGCATC AACGTCTATG ACATCCTGCG CCGCGACACC CTGGTCCTGA CCAAGGCCGC CGTGGACGCG CTGGAGGCGC GCTTCAAATG A
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Protein sequence | MEITVKTLDG IEAGSVTLSD EIFGLEPRAD ILHRCVTWQL SRRQAGTHRT KGRSEINRTS KKMYKQKGTG NARHGAASAP QFRGGGRAFG PVVRSHAIDL PKKVRALALK HALSSKAKAA QIIVLDKVSL DDPKTKALKE HFAKLGLESV LIVDGAQVEQ NVALAARNLP YVDVLPIQGI NVYDILRRDT LVLTKAAVDA LEARFK
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