| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_1202 |
|---|
| Symbol | |
|---|
| ID | 5421833 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthobacter autotrophicus Py2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009720 |
|---|
| Strand | - |
|---|
| Start bp | 1381725 |
|---|
| End bp | 1383311 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640880450 |
|---|
| Product | D-3-phosphoglycerate dehydrogenase |
|---|
| Protein accession | YP_001416108 |
|---|
| Protein GI | 154245150 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.661102 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACCCC GTGTTCTCAT TTCCGACAAG CTCTCCCCCG CCGCCGTGCA GATCTTCAAG
GATCGCGGCA TCGAGGTGGA TTTCCAGCCC GACCTCGGCA AGGACAAGGA CAAGCTGGCC
GAGATCATCG GCAATTATGA CGGCCTCGCC ATCCGCTCGG CCACCAAGGT CACCCCGAAG
ATCCTTCAGA AGGCCGGCCG CCTGAAGGTC ATCGGCCGCG CCGGCATCGG CGTTGACAAT
GTCGACCTGC CGGCGGCGAC CGCCAAGGGC GTGATCGTGA TGAACACGCC GTTCGGCAAT
TCCATCACCA CCGCCGAGCA TGCCATCGCC ATGATGTTCG CGCTGGCCCG CGAGATCCCG
GCGGCGGATG CCTCCACCCA GGCCGGCAAG TGGGAGAAGA ACCGCTTCAT GGGCGTCGAG
GTCACCGCCA AGACGCTGGG CATCATCGGC TGCGGCAACA TCGGCTCCAT CGTGGCCGAG
CGCGGCGTGG GCCTGAAGAT GAAGGTGATC GCCTTCGATC CCTTCCTCTC GGTGGAGCGG
GCGCTGGATC TCGGCGTGGA GAAGGTGGAG CTGGACGACC TGCTCGCCCG CGCCGACTTC
ATCACCCTGC ACACGCCCTT GACCGAGAAG ACCAAGAACA TCCTCTCGGC CGAGAATATC
GCCAGGACGA AGAAGGGCGT GCGCATCATC AACTGCGCCC GCGGCGGCCT GGTGGACGAA
GCCGCCCTGC GCGCCGCCCT CGACAGCAAG CATGTGGCGG GCGCCGCCTT CGACGTGTTC
GCGGTGGAGC CGGCGGAGCA GAACCCGCTG TTCGGTCATC CCAACGTGGT GTGCACGCCG
CACCTCGGCG CCGCCACCAA CGAGGCGCAG GAGAATGTCG CCCTCCAGGT CGCCGAGCAG
ATGAGCGACT ATCTCCTCAC CGGCGCCATC ACCAACGCGG TGAACTTCAC CTCCATCACC
GCCGAGGAAG CGCCGAAGCT GAAGCCTTTC ATCGCGCTCG CTGAGAAGCT CGGCTCGTTC
GCCGGCCAGC TCACCGACAC CGACATCAAG ACTGTGCACA TCGTCTACGA AGGCGCGGTG
GCGGACCAGA AGGTGAAGGC GCTGACCTCG GCCGCGGTGG CAGGGCTGCT GCGCCCGATG
CTCTCAGAGG TCAATGTCGT GTCCGCCCCC ACCGTCGCCA AGGAACGCGG CATCGTCATC
GAGGAGACCA CCCGCGCCGC CACCGGCGAC TATGACAGCC TCATCAGCAT CACGGTGGTG
ACCGACACGT ATGAGCGCGC GATATCCGGC ACCGTGTTCG CGGATGGCCG CCCGCGCATC
GTGAACATCA AGGGCATCAA TGTGGACGCC GAGTTCGCGC CCTCCATGAT CTATGTCACC
AACGAGGACA AGCCCGGCTT CATCGGCCGC TTCGCCGGCC TGCTGGGTGA TGCGGGCCTG
AACATCGCAA CCTTCGCCCT CGGCCGCGAC CATCTGGGCG GCGACGCCAT CGCGCTGGTG
GCGGTGGATG GCACCGTGCC GGCCGACGTG CTCGGCAAGG TGCAGGCGCT GCCGCAGGTG
AAGGCGGCCA AGGCGCTGGC GTTCTGA
|
|---|
| Protein sequence | MAPRVLISDK LSPAAVQIFK DRGIEVDFQP DLGKDKDKLA EIIGNYDGLA IRSATKVTPK
ILQKAGRLKV IGRAGIGVDN VDLPAATAKG VIVMNTPFGN SITTAEHAIA MMFALAREIP
AADASTQAGK WEKNRFMGVE VTAKTLGIIG CGNIGSIVAE RGVGLKMKVI AFDPFLSVER
ALDLGVEKVE LDDLLARADF ITLHTPLTEK TKNILSAENI ARTKKGVRII NCARGGLVDE
AALRAALDSK HVAGAAFDVF AVEPAEQNPL FGHPNVVCTP HLGAATNEAQ ENVALQVAEQ
MSDYLLTGAI TNAVNFTSIT AEEAPKLKPF IALAEKLGSF AGQLTDTDIK TVHIVYEGAV
ADQKVKALTS AAVAGLLRPM LSEVNVVSAP TVAKERGIVI EETTRAATGD YDSLISITVV
TDTYERAISG TVFADGRPRI VNIKGINVDA EFAPSMIYVT NEDKPGFIGR FAGLLGDAGL
NIATFALGRD HLGGDAIALV AVDGTVPADV LGKVQALPQV KAAKALAF
|
|---|
| |