| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xaut_0082 |
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| Symbol | |
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| ID | 5425379 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xanthobacter autotrophicus Py2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009720 |
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| Strand | + |
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| Start bp | 88123 |
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| End bp | 89916 |
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| Gene Length | 1794 bp |
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| Protein Length | 597 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640879327 |
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| Product | transcriptional regulator NifA |
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| Protein accession | YP_001414998 |
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| Protein GI | 154244040 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.765061 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTCATA ACGAAGCGTT GCAAGTCGAG CGCGAGCAGC CCCGGGCTCA TGTTCCCCTC
GTATCCCTGA GCGATGTGGC GCTCACCGGG ATCTACGAGA TCTCGAAGAT TTTGACGGCG
CCGAACCGGC TTGAAACCAC GCTGTCGAGC GTGGTCAGCC TGCTTTCGTC CTTCATGCAG
ATGCGCCATG GCGTTATTTC GCTGCTGGAA GACGACGGAA TTCCCAACAT CACAGTGGGC
GCCGGCTGGA ACGAGGGCAC CGATGCGCGC TACCGCGCAC GCCTTCCGGA GAAGGCGATC
GGCCAGGTGA TCGCCACCGC CGTGCCGCTG ATCGCGGAGA ACGTTGCTTC CCATCCCGCT
TTCGCCCCGG CCGATGTGGC CGCGCTGGGC GCCAGCGAGG AGACCCGCGT CTCCTGGATC
GGTGTTCCGC TGCGCGTCGG CGCGCGCGTT ATCGGCACCC TCACCATCGA CCGGGTGTGG
GACGGGCGCT CCGTGTTCCG CCTCGATTCC GACGTGCGCT TCCTGACCAT GGTGGCGAAC
CTGATTGGCC AGACCGTGCA GCTGCATCGC GTTGTCTCCC GCGATCGCGA GCGCCTGATG
GCCGAGAGCG GGCGCCTGCA GAAGGAATTG TCCGAGCTGA AGCCCCATAC GGGCAGCCGC
GAGCGCAAGC GCGTCTTTGT GGACGGCATC ATCGGCGAGA GCCGGGAGAT CCGCGCGCTG
CTCGACAAGA TCATGATTGT CGCCAAGTCC CATTCGCCCG TGCTGCTGCG CGGCGAGAGC
GGCACCGGCA AGGAGTTGAT CGCCAAGGCG ATCCACGAGA TGTCGCCGCG GGCCAAGGGC
CCCTTCATCA AGCTGAACTG CGCCGCGCTG CCGGAATCCG TTCTCGAATC CGAACTGTTC
GGTCACGAGA AGGGTGCCTT CACCGGCGCC GTGGGGGCCC GCAAGGGTCG CTTCGAACTG
GCGGACAAGG GCACGCTCTT CCTCGACGAG ATCGGCGAGA TCTCGCCCTC GTTCCAGGCC
AAGCTGCTGC GCGTGCTGCA GGAACAGGAG TTCGAGCGGG TCGGTGGTTC CCACACGCTG
AAGGTGAACG TGCGTGTCGT CGCCGCCACC AACCGCAATC TTGAGGAAGC GGTGGCGAAG
AACGAGTTCC GCGCCGATCT CTACTACCGC ATCAGCGTCA TCCCGGTGAT CGTGCCGTCG
CTGCGCGATC GCCGCGTGGA TATCCCGCTG CTCGCCAACG AGTTCCTCGA TCGCTTCAAC
CGTGAGAACG GTCGCGATCT GGCGTTCAAT CCCGACGCCA TGGAAGTCCT TATGGGCTGC
GGTTTCCCCG GCAATGTGCG TGAGCTTGAA AACTGCGTGC AGCGCACCGC CACCCTTGCC
CAGGGCGGCG CCATCGTCAG CGACGACTTC GCCTGCAAGC ACAACGAGTG TCTGTCGGCG
CTGCTGTGGC GCAGCCCGGC CGAAGCGGCG ACGCGCCGGC CCGTGGAAAT CCCCTTGCCG
GTGATGCCGT CGGTGGTCGC TCCCATTGGC GGCGAGCCGG CCAATTCCAA TACCGTGACC
AAGCTCCCGC TGCCCTTGGT CGCGCCGCAG CCCCTCTTGC CGGCCGCCGC TCCGGCGGTG
GCGCCAGCCC GGCCGACCGC GCTGGACGAG GACTTGTCTG AGCGTGAGCG GCTGGTGGAC
GCCATGGAGC GGGCCGGCTG GGTGCAGGCG AAGGCCGCGC GGCTGCTGGG CCTGACCCCG
CGCCAGATTG GCTACGCGCT GAAGAAGCAC GACATCGAGA TCAAGCGCTT CTGA
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| Protein sequence | MVHNEALQVE REQPRAHVPL VSLSDVALTG IYEISKILTA PNRLETTLSS VVSLLSSFMQ
MRHGVISLLE DDGIPNITVG AGWNEGTDAR YRARLPEKAI GQVIATAVPL IAENVASHPA
FAPADVAALG ASEETRVSWI GVPLRVGARV IGTLTIDRVW DGRSVFRLDS DVRFLTMVAN
LIGQTVQLHR VVSRDRERLM AESGRLQKEL SELKPHTGSR ERKRVFVDGI IGESREIRAL
LDKIMIVAKS HSPVLLRGES GTGKELIAKA IHEMSPRAKG PFIKLNCAAL PESVLESELF
GHEKGAFTGA VGARKGRFEL ADKGTLFLDE IGEISPSFQA KLLRVLQEQE FERVGGSHTL
KVNVRVVAAT NRNLEEAVAK NEFRADLYYR ISVIPVIVPS LRDRRVDIPL LANEFLDRFN
RENGRDLAFN PDAMEVLMGC GFPGNVRELE NCVQRTATLA QGGAIVSDDF ACKHNECLSA
LLWRSPAEAA TRRPVEIPLP VMPSVVAPIG GEPANSNTVT KLPLPLVAPQ PLLPAAAPAV
APARPTALDE DLSERERLVD AMERAGWVQA KAARLLGLTP RQIGYALKKH DIEIKRF
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