Gene Xaut_0009 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagXaut_0009 
Symbol 
ID5424949 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXanthobacter autotrophicus Py2 
KingdomBacteria 
Replicon accessionNC_009720 
Strand
Start bp9715 
End bp10419 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content72% 
IMG OID640879254 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001414925 
Protein GI154243967 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only
[I] Lipid transport and metabolism 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.865732 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000720123 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACTGCTT TGGAGCGCGT CGCCGTCGTC ACCGGCGGCG GCACGGGGAT CGGCCGCGCG 
GTGGCCGAGC ATCTGCTGGC GGACGGCTAT AGGGTGGTGG TGGCCGGGCG CGACCGGGAT
GACGACCTGC CGGCGGCTAT CGGTTTCGCC GAGCTGGATG TCACCGACGC CAAGGCGGTG
GCGGCCTTCG CATCCGGCTT CCCGCGCCTG TCGGCGCTGG TGAACTGCGC CGGCATCATC
CTGCACGAGG GCCGGGAACT GACGCCAGAG GGGTTCGCCA AGGTCATCGA CGTGAACCTC
AACGGCTCCA ACATCACGAC GCTGGCCTTC CGCGCGGCGC TGGGCGCGGC GGGCGGGGCG
GTGGTGAACA CCGCCTCCAT GTGGAGCTAT TTCGGCTCGG GGCGGAACCC GGCCTATGCG
GCGAGCAAGG GCGCCGTCCT CCAGCTCACC CGCTCCCACG CGGTGGGGTT CGCGGCGGAG
GGCATCCGGG TGAACGCGGT GGCGCCGGGC TGGATCGAGA CCCGCCTGTC CGCCGGCGCG
TTGCAGAACC CCGAGCGGGC CGGACCCATC ATGGCGCGCA TCCCCATGCA GCGCTGGGGC
AAGCCTTCCG ACGTGGCGCA GGTGGTGGGC TTCCTCCTGT CCCCGGCGGC GGCCTATGTG
ACGGGGGCCA TCATCCCCGT GGATGGTGGC TTCGGCATCG CGTGA
 
Protein sequence
MTALERVAVV TGGGTGIGRA VAEHLLADGY RVVVAGRDRD DDLPAAIGFA ELDVTDAKAV 
AAFASGFPRL SALVNCAGII LHEGRELTPE GFAKVIDVNL NGSNITTLAF RAALGAAGGA
VVNTASMWSY FGSGRNPAYA ASKGAVLQLT RSHAVGFAAE GIRVNAVAPG WIETRLSAGA
LQNPERAGPI MARIPMQRWG KPSDVAQVVG FLLSPAAAYV TGAIIPVDGG FGIA