Gene Xaut_0004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagXaut_0004 
Symbol 
ID5421964 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXanthobacter autotrophicus Py2 
KingdomBacteria 
Replicon accessionNC_009720 
Strand
Start bp4865 
End bp6118 
Gene Length1254 bp 
Protein Length417 aa 
Translation table11 
GC content65% 
IMG OID640879249 
Productextracellular ligand-binding receptor 
Protein accessionYP_001414920 
Protein GI154243962 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value5.38672e-06 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATCCGGC AGATTCTGGG TGGCACACTG GTGCTCGCGG CGGCGGCCGC CATCGGTCTT 
GCACCGGCGA AGGCCGATCC GCAGGACGTG ACGGTGGGCT TCGTGCTGCC GCTGTCCGGC
GGTTCGGCCA CCATCGGCAA CCAGACAAAG CTCGGCGCCC AGGTGGCGGC CGAACAGATC
AACGCGGCGG GCGGCATCGC CTCCCTCGGC GGGGCGAAGC TGAAGCTGAT TTTCGCCGAC
AGCCAGTCCA AGCCCGATAT CGGCGCCTCG GAGACCGAGC GGCTGATCCA GCGCGAGAAC
GTCGCCCTGC TGGTGGGCGC CTACAACAGC GCGGTCACCT TCCCGGCCTC GGAAGTGGCC
GAGCGCTACA AAACGCCGTG GATCGTCACC GGCGCGGTGA AGGACGAGAT CACCGAGCGC
GGCTTCAAAT ACGTGTTCCG CCCCAACAAC AAGGCCACCT ACGACGCGCG CGAGCAGCTC
GACGCCATCG ATCTTCTGAA GAAGGAGACC GGCAAGGGTC CCTCAAGCAT CGGCCTGTTC
TACGAAGGCA CCGACTGGGG CCGCTCGCAC GCCGCGAACA TCAAGAAGTT CGCCAAGGAG
CGCGGCTACA CCATCTCCCT CGACGAGAGC TTCCCGCCCA ACCAGGTGGA CTTCACCGCC
CAGATGCTGA AGATCCGCGC GGCGAAGCCC GAGGCGCTCA TCGTGGTGGC CTATACGCCG
GACCACCTGC TGTTCACCCG CCAGTATTTC GAGAACAAGA TCAACATTCC CTACGGCATC
CACTCGGTGG GCGGCGGCTC TGAAGATCCG TCCTTCTACA AGGCGGTGCC GCAGAAGGCC
GTGGACTATC TGTTCGTGCA GGAAGACTGG CAGATCGACC GCCTGAAGAC CGACACCGAC
CCGCGCGTGG TGGATGCAAA CACCCGCTTC AAGGCCCAGG CCGGCTACGA TATCAATTCC
TACGGCGCCC AGGGCATCTC CAACATCTAT CTCATCAAGG ACGTGCTGGA GCGGTCCGCC
TCCGCCGACC GGGAGAAGAT CCGCGACGCG CTCGCCGCCA CCGACATCAC CTCCGGCATG
CCGCTGATCG TCGGCTACCA GCGCATCAAG TTCGATGAGC AGGGCCAGAA CACCTTCGCC
CATGGGGTGA TTTCCGAGAA CATCGGCGGC GAGCGCCGCA CCATCTGGCC CTCCGCCAAC
CGCGCCCCCG ACACCAAGCC GGTTTGGCCG GTGCCGGACT GGTCGGCCCG CTGA
 
Protein sequence
MIRQILGGTL VLAAAAAIGL APAKADPQDV TVGFVLPLSG GSATIGNQTK LGAQVAAEQI 
NAAGGIASLG GAKLKLIFAD SQSKPDIGAS ETERLIQREN VALLVGAYNS AVTFPASEVA
ERYKTPWIVT GAVKDEITER GFKYVFRPNN KATYDAREQL DAIDLLKKET GKGPSSIGLF
YEGTDWGRSH AANIKKFAKE RGYTISLDES FPPNQVDFTA QMLKIRAAKP EALIVVAYTP
DHLLFTRQYF ENKINIPYGI HSVGGGSEDP SFYKAVPQKA VDYLFVQEDW QIDRLKTDTD
PRVVDANTRF KAQAGYDINS YGAQGISNIY LIKDVLERSA SADREKIRDA LAATDITSGM
PLIVGYQRIK FDEQGQNTFA HGVISENIGG ERRTIWPSAN RAPDTKPVWP VPDWSAR