| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3632 |
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| Symbol | |
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| ID | 5454738 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3888557 |
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| End bp | 3890743 |
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| Gene Length | 2187 bp |
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| Protein Length | 728 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640879216 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_001414887 |
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| Protein GI | 154254063 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0176906 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.00320297 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTTAAAA TCACACGCGA AGAAATTGAA TGGGGCGGCC GTACGCTCGT CCTCGAAACG
GGCAAGATCG CCCGTCAGGC CGATGGCGCG GTTCTCGCGA CCTACGGCGA CACCACCGTT
CTCGCCACCG TTGTTGGCGA ACGCAAGCCG AAGCCCGGCC TCGATTTCTT CCCCCTGACC
GTGAATTATC AGGAAAAGAC CTATGCCGCG GGCAAGATTC CCGGCGGCTT CTTCAAGCGT
GAAGGCCGTC CGAGCGAAAA GGAAACGCTC GTCTCCCGCC TGATCGACCG TCCGATCCGT
CCGCTCTTCA TCAAGGGCTT CAAGAACGAA ACCCAAGTGA TCGCCACCGT CGTCAGCCAC
GACATGGAAA ACGATCCCGA CATCGTCGCC ATGATCGCGG TCTCCGCCGC GCTCACCATT
TCCGGCCTGC CTTTCCTTGG GCCCATCGGC GCCGCGCGCG TCGGCTATAT CGGCGGTGAG
TACAAGCTCA ACCCGATGAT CGACGAGATG CCCGAAAGCG CGCTCGACCT CGTGGTCGCC
GGCACCGCCG ACGCCGTGAT GATGGTGGAA TCGGAAGCGA AGGAACTTTC CGAAGACATC
ATGCTCGGCG CCGTCATGTT CGGCCACAAG GAATTCCAGC CGGTGATCGA CATGATCATC
CGCATGGCCG AGAAATGCGC GAAGGAGCCG CGCGCCATCG ACGTGAAGGA CAATTCCGAA
CTCGTCGCCA AGGTGCGTGA GCTGGCCGAA AGCGATGTCC GCGCCGCTTA TGGCCTGAAG
GACAAGGGCC AGCGTCACGA GGCGCTCGCC GCCGCGAAGG ACAAGGTGAA ATCCGCCCTC
TGCAATCCGG AAGATCCGAA CGCCGTTTCG GAAACGGATG TCGGCGGCGT CTTCAAGAGC
ATCGAAAGCG ACGTCGTCCG CAACTCGATC CTCGACACGA AAAGCCGCAT CGATGGCCGC
GATCTCGAAA CCGTTCGCCC CATCGTCTCG GAAGTGGGCG TGCTCCCGCG CACGCATGGT
TCGGCGCTCT TCACGCGCGG CGAAACGCAG GCCCTCGTGG TGGCGACGCT CGGCACCGGC
GATGACGAGC AGTTCATCGA CGCGCTGGAA GGCACCTACA AGGAAAACTT CCTGCTGCAC
TACAACTTCC CGCCCTTCTC CGTCGGCGAG ACGGGCCGCG TCGGCTTCAC CGGCCGCCGC
GAAGTCGGTC ACGGCAAGCT CGCCTGGCGC GCGCTCCGTG CGGTGCTTCC GCCCAAGACC
GAGTTCCCCT ACACGCTGCG CCTCGTCTCG GAAATCACCG AGTCGAACGG TTCCTCCTCG
ATGGCAACCG TTTGCGGCTC CTCGCTCGCG ATGATGGATG CGGGTGTGCC GCTGAAGCGC
GCCGTCGCCG GCATCGCCAT GGGCCTCATC CTCGAAGGTG AGCGTTTCGC CGTTCTGTCG
GACATCCTCG GCGACGAGGA TCACCTCGGC GACATGGACT TCAAGGTGGC GGGCACGCAG
GAAGGCGTGA CCTCGCTCCA GATGGACATC AAGATCACCG GCATCAACGA GCGCATCATG
AAGCAGGCCC TCGCCCAGGC GAAGGGCGGC CGCTTGCATA TTCTCGGCGA GATGGCGAAA
GCTCTCGACA CGGCCCGCCC CGAAATGGGC GAATACGCGC CGCGTATCGA AGTGATCACC
GTGCCGACCG ACAAGATCCG TGAAGTCATC GGCACGGGCG GCAAGGTCAT CCGCGAGATC
GTGGAAAAGA CGGGCGCCAA GGTCGACATT TCCGACGACG GCACCATCAA GGTCGCCTCG
TCCGACGGCG AGTCGATCCG CAAGGCGATC GCCTGGATTC AGGGCATTGT CGCCGAGCCG
GAAGTCGGCA AGATCTATGA GGGCACGGTC GTGAAGGCGG TCGATTTCGG CGCCTTCGTG
AACTTCTTCG GCCCGCGCGA CGGTCTCGTG CACATCTCGC AGATGGCGCC GACCCGCGTG
GAGCAGGTCT CCGATGTCGT CAAGGAAGGC GACAAGGTCA AGGTCAAGCT CCTGGGCTTC
GATGATCGCG GCAAGGTCCG CCTGTCGATG AAGCATGTGA ACCAGGAAAC CGGCGAAGAG
ATCGTCTACG AAAACGAGCC CGCCGAGCAG CCCCGCGAAA AGCGCGAAGG CGGCGGTGGT
CGCGGTCGCC GTCGCGAACG CGACTGA
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| Protein sequence | MFKITREEIE WGGRTLVLET GKIARQADGA VLATYGDTTV LATVVGERKP KPGLDFFPLT
VNYQEKTYAA GKIPGGFFKR EGRPSEKETL VSRLIDRPIR PLFIKGFKNE TQVIATVVSH
DMENDPDIVA MIAVSAALTI SGLPFLGPIG AARVGYIGGE YKLNPMIDEM PESALDLVVA
GTADAVMMVE SEAKELSEDI MLGAVMFGHK EFQPVIDMII RMAEKCAKEP RAIDVKDNSE
LVAKVRELAE SDVRAAYGLK DKGQRHEALA AAKDKVKSAL CNPEDPNAVS ETDVGGVFKS
IESDVVRNSI LDTKSRIDGR DLETVRPIVS EVGVLPRTHG SALFTRGETQ ALVVATLGTG
DDEQFIDALE GTYKENFLLH YNFPPFSVGE TGRVGFTGRR EVGHGKLAWR ALRAVLPPKT
EFPYTLRLVS EITESNGSSS MATVCGSSLA MMDAGVPLKR AVAGIAMGLI LEGERFAVLS
DILGDEDHLG DMDFKVAGTQ EGVTSLQMDI KITGINERIM KQALAQAKGG RLHILGEMAK
ALDTARPEMG EYAPRIEVIT VPTDKIREVI GTGGKVIREI VEKTGAKVDI SDDGTIKVAS
SDGESIRKAI AWIQGIVAEP EVGKIYEGTV VKAVDFGAFV NFFGPRDGLV HISQMAPTRV
EQVSDVVKEG DKVKVKLLGF DDRGKVRLSM KHVNQETGEE IVYENEPAEQ PREKREGGGG
RGRRRERD
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