| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3630 |
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| Symbol | |
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| ID | 5454704 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3887033 |
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| End bp | 3887956 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640879214 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_001414885 |
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| Protein GI | 154254061 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.326344 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 0.032374 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCGCC GCAAAAAAGG CGAGGCGGTT TCGGGCTGGG TCGTGGTGGA CAAGCCGGTC
GGGCCCACCT CCTCCGATGT CGTGAACAGG ATCCGCCGCG CCTTCAATGC CCAGAAGGCA
GGCCATGCCG GCACGCTCGA TCCCCTCGCG AGCGGCATCC TGCCCGTCGC CCTCGGCGAG
GCGACCAAGA CCGTCCCCTT CATGATCGAC GCCGCCAAGG GCTACCGCTT CACAATCCGC
TTCGGCGAGG CCACGACCAC GCATGACGCC GAGGGCGAAG TCACCGAAAC GAGCCCCCGC
CGCCCGTCGG ATGCCGAAAT CGAAGCCGGT TTCGCGGCCT TCAGGGGCGA AATCCAGCAG
GTTCCTCCCG CTTTTTCCGC CATCAAGATC GATGGCGAGC GCGCCTATGC CCGCGCCCGG
GCCGGCGAGG AAGTGGTCAT GGAGGCCCGT CCCGTCACAA TTCACGAAAT CGCCCTTCTG
GGCCGTCCCG ACACCGACCA TGCCGAGCTG GAAATCCTTT GCAGTAAAGG CACTTACGTC
CGTTCGCTGG CCCGCGACCT GGCGCTGGCG CTCGGCACCG TCGGCCATGT TTCCGCCCTC
CGGCGCACCC GCCACGGCCC CTTCCGGGAA GAGGCCGCAA TTCCGCTGGA TAAACTCTGC
GCCTTGGGCC ATATTGCGCC CGCTCCCGGC TCTGGGGCGC ATTTACTGCC GCTTGAGACC
GCGCTGGACG ACATCCCGGC GCTGGCCGTA AGCGGCGACG ATGCGGCCCG ATTGAGAAAG
GGTCAGGGAG TTTTGTTGCG CGGGCGCGAC GCACCCATCC TTTCCGGATC GGTTCTGGCG
ACCCATCGGG GAGACCCGGT GGCGCTGACC GAATACAGGC AAGGGGAGCT CTGTCCCGTC
CGCGTGTTCA ATCTCGGTTC ATAA
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| Protein sequence | MARRKKGEAV SGWVVVDKPV GPTSSDVVNR IRRAFNAQKA GHAGTLDPLA SGILPVALGE
ATKTVPFMID AAKGYRFTIR FGEATTTHDA EGEVTETSPR RPSDAEIEAG FAAFRGEIQQ
VPPAFSAIKI DGERAYARAR AGEEVVMEAR PVTIHEIALL GRPDTDHAEL EILCSKGTYV
RSLARDLALA LGTVGHVSAL RRTRHGPFRE EAAIPLDKLC ALGHIAPAPG SGAHLLPLET
ALDDIPALAV SGDDAARLRK GQGVLLRGRD APILSGSVLA THRGDPVALT EYRQGELCPV
RVFNLGS
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