| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3626 |
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| Symbol | |
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| ID | 5455837 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3881572 |
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| End bp | 3883182 |
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| Gene Length | 1611 bp |
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| Protein Length | 536 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640879210 |
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| Product | NusA antitermination factor |
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| Protein accession | YP_001414881 |
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| Protein GI | 154254057 |
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| COG category | [K] Transcription |
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| COG ID | [COG0195] Transcription elongation factor |
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| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 0.475474 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGTAA GCGCCAACCG GCTCGAACTG TTGCAGATCG CGGATGCGGT CGCGCGCGAA
AAGTCGATCG ACCGCGAAGT CGTCATCGAG GCGATGGCGG AAGCGATCCA GAAGGCCGCG
CGTTCCCGCT ACGGCGCGGA AAATGAAATC CGTGCACGGA TCAATCCGCA GACCGGTGAA
ATTCGCCTCG TGCGCCTCCT CGAAGTGGTG GACACAGTCG AAAACGACGC CGTCCAGATC
GACCTGAAAT CCGCGCAGCG CCGCAATCCG GCCGCGCAGC TCGGCGATCT CATCGAGGAC
GAGCTGCCGC CGGTCGATTT CGGCCGCATC GCCGCGCAGA CCGCCAAGCA GGTCATCGTG
CAGAAGGTGC GCGACGCCGA GCGCGAGCGC CAGTACGACG AATACAAGGA TCGCATCGGC
GAGATCGTCA ACGGCATCGT CAAGCGCGTC GAATACGGCA ACGTCATCGT CGATCTCGGT
CGCGGCGAAG CCATTGTCCG CCGCGACGAG CTGCTTCCGC GCGAAACCTT CCGCAATGGC
GATCGCGTCC GCGCCTATAT CTATGACGTG CGCCGCGAAC AGCGCGGCCC GCAGATTTTC
CTCTCGCGCT CGCATCCCCA GTTCATGGCG AAGCTCTTCG CGCAGGAAGT GCCGGAAATC
TATGATGGCA TCATCGAGAT CAAGGCCGTC GCCCGCGATC CGGGCAGCCG TGCGAAGATC
GCCGTTCTCT CGAACGACTC GTCGATCGAT CCCGTCGGCG CCTGCGTCGG TATGCGCGGC
TCCCGCGTGC AGGCCGTGGT GAACGAATTG CAGGGCGAAA AGATCGACAT CATCCAGTGG
TCGCCCGATG CCGCCACCTT CATCGTCAAT GGCCTCGCGC CGGCCGAAGT CGTCAAGGTC
GTGCTGGACG AAGATGCACA GCGCATCGAA GTCGTCGTGC CGGACGATCA GCTCTCGCTA
GCCATTGGCC GCCGTGGCCA GAACGTGCGC CTCGCCTCGC AGCTCACCGG CTGGGATATC
GACATCCTGA CCGAGGCCGA AGAGAGCGAA CGCCGTCAGG CCGAATTCCT CAGCCGCACG
GCAACCTTCG CCGAGGCGCT TGATGTCGAC GAGATGATCG CGCAGCTCCT CGCCTCCGAA
GGCTTCGCCT CGATCGAGGA AGTGGCTTAT GTCGACCTCG ATGAAATCGC CGAAATCGAA
GGCTTCGACG AAGACACCGC TCAGGAAATC CAGAGCCGCG CGCTCGAATA TATCGAACGC
CAGAACGCGG AGTTCGATGC GAAGCGCCGT GAGCTCGGCG TCGCCGATGA AGTGGCCGAC
GTGCCGGGCG TCACGCCGAA GATGATGGTT GCCTTCGGCG AGAACGACGT GAAGACGGTC
GAGGACCTTG CCGGCTGTGC CACCGACGAT CTCATCGGCT GGAACGAGAC GGTGAACGGC
GAGCGCAAGC ATCAGCAGGG TATCATCGAG GGCTTCGATC TGACCGCCGA GGAGGCGAAC
GACCTCATCA TGCAGGCGCG CCTCAAGGCC GGCTGGATCA CCGAGGCCGA TCTCGCCTCC
GACGAAGAGG AAGAGGCCGG TGAAACGGAC GAGGTTGGTG AAGAAGCCTG A
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| Protein sequence | MAVSANRLEL LQIADAVARE KSIDREVVIE AMAEAIQKAA RSRYGAENEI RARINPQTGE
IRLVRLLEVV DTVENDAVQI DLKSAQRRNP AAQLGDLIED ELPPVDFGRI AAQTAKQVIV
QKVRDAERER QYDEYKDRIG EIVNGIVKRV EYGNVIVDLG RGEAIVRRDE LLPRETFRNG
DRVRAYIYDV RREQRGPQIF LSRSHPQFMA KLFAQEVPEI YDGIIEIKAV ARDPGSRAKI
AVLSNDSSID PVGACVGMRG SRVQAVVNEL QGEKIDIIQW SPDAATFIVN GLAPAEVVKV
VLDEDAQRIE VVVPDDQLSL AIGRRGQNVR LASQLTGWDI DILTEAEESE RRQAEFLSRT
ATFAEALDVD EMIAQLLASE GFASIEEVAY VDLDEIAEIE GFDEDTAQEI QSRALEYIER
QNAEFDAKRR ELGVADEVAD VPGVTPKMMV AFGENDVKTV EDLAGCATDD LIGWNETVNG
ERKHQQGIIE GFDLTAEEAN DLIMQARLKA GWITEADLAS DEEEEAGETD EVGEEA
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