| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3582 |
|---|
| Symbol | |
|---|
| ID | 5456849 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3829281 |
|---|
| End bp | 3830438 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640879166 |
|---|
| Product | putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_001414837 |
|---|
| Protein GI | 154254013 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 92 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGCTT CCGGAGCTGA TGAACCGGGT TTCGGCGTCT ATGTTCACTG GCCCTTCTGC
CAGTCGAAAT GTCCCTACTG CGATTTCAAC AGCCATGTCG TCGCCAATGT CGATCAGGCG
CGCTGGGCAA AGGCGCTGAC GCGCGAACTT CAATATATGC GTGGCCTCAC CGGCCCCCGC
AGCGTCCGCT CGATCTTCTT CGGCGGCGGT ACGCCGTCGC TGACGGAGCC GGCAACCGTC
GAGGCGGTGC TGACGCAGAT CGCCGCGCTC TGGACGGTGG AGCAGGGCGC CGAGATCACG
CTCGAGGCAA ACCCCACCAG CGTCGAGGCC GCGCGCTTTC GTGGCTATCG CAAGGCGGGC
GTCAACCGTC TCTCGCTCGG CGTCCAGTCG CTTGATGACA GGGAGCTGAA ATTTCTCGGC
CGTCTCCACA CGGCGGATGA AGCACTCCGC GCCATCGCAC TTGCCCGCGA AACCTTCCCG
CGCCTTTCCT TCGACCTCAT CTATGCGCGC CCCGGCCAGA CGAAGGAAAA ATGGACGGCG
GAACTTCGCG CCGCACTCGC TCATGCGGTG GACCATCTCT CGCTCTATCA ACTCACCATC
GAGGAAGAGA CAGCCTTCGC GCGCCTCTAC GAGAAAGGCG CCTTCAAACT GCCCGGCGAA
GACGAGGCCG CCGAACTTTA CGCCCTCACA GGCGAAATCG CGGCCGAAGC CGGATTATCC
GCCTACGAAG TATCGAACTA TGCCCGGCCC GGTGCCGAAG CCCGCCACAA TCTCGTCTAT
TGGCGCTATG GCGACTATGC CGGTGTCGGG CCCGGCGCGC ATGGCCGCAT CTCGACGGAA
GGAAAGCGCC TCGCCACGCG CACGCTTCGC ATGCCCGGCG CATGGATCGA AAATGTCGAA
CGCGATGGAC ACGGCCTCGA AGCATCGGAG GAAATACCCG GCGCGGCGCA AGGCGACGAA
ATGATGCTGA TGGGCCTGAG GCTGGAGGAA GGTGTATCGC TTGCGCGCTA CGCCGCGCTC
GCCGGGAAGG AAATTGCCGC CCCCCGCATC GGCAACCTGA TCGCCGATGG CTTGTTGATG
AGAAATGGCG ACATCATCCG CACGACGCCG CAAGGCCGCC TCGTGCTCGA CGCGCTGCTG
GCGCGGCTTC TCGCCTAG
|
|---|
| Protein sequence | MPASGADEPG FGVYVHWPFC QSKCPYCDFN SHVVANVDQA RWAKALTREL QYMRGLTGPR
SVRSIFFGGG TPSLTEPATV EAVLTQIAAL WTVEQGAEIT LEANPTSVEA ARFRGYRKAG
VNRLSLGVQS LDDRELKFLG RLHTADEALR AIALARETFP RLSFDLIYAR PGQTKEKWTA
ELRAALAHAV DHLSLYQLTI EEETAFARLY EKGAFKLPGE DEAAELYALT GEIAAEAGLS
AYEVSNYARP GAEARHNLVY WRYGDYAGVG PGAHGRISTE GKRLATRTLR MPGAWIENVE
RDGHGLEASE EIPGAAQGDE MMLMGLRLEE GVSLARYAAL AGKEIAAPRI GNLIADGLLM
RNGDIIRTTP QGRLVLDALL ARLLA
|
|---|
| |