| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3537 |
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| Symbol | |
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| ID | 5455617 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3780267 |
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| End bp | 3781046 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640879121 |
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| Product | lytic transglycosylase catalytic |
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| Protein accession | YP_001414792 |
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| Protein GI | 154253968 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.401934 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 60 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGGTC CACGTCCAGC GATAAGCCAT CGGGATGCGG GCGGGCGGCA TCACGCCGTC
CGGCGCATGG CCTTCCTTCT CCTTTCCGGC CTGGCCCTCG CAGCGGGCGC AACGGACGCC
GCTCTTGCCC AGTCCGTGTC GGCTGCGCGC ACGGTCGCTG GCGATCCACA CGCCGCCTTC
GTCACCGAAG CCTCGCAGCG CTTCGGCATT CCCGAACACT GGATCGTCGC CGTCAAACGC
GCCGAAAGCG CCGGCGATGT GCGCGCCATA TCGTCGGCCG GCGCGCTCGG GTTGATGCAG
GTCATGCCCG ATACCTGGGC CGCGCTTCGC GTTCGCTATG GGCTCGGGCG TGCCCCCTAC
GACCCGCGCG ACAACATCCT CGCAGGCGCT GCCTACCTGC GTGAAATGTT CGACCGCTAT
CGCACGATCC CCGCAATGCT CGGCGCCTAC AATGCGGGGC CTGGCCGCTA CGACGAATAC
GTCCAGACCG GCCGCGCCCT GCCCGCCGAA ACGCGGGCCT ACATCGCGCT GCTGGCTCCG
CAGCTAGGCG CACCATCGCC GTCGAGCGCG CCACCGGTTG CGCCGCCACC GCCGCCGGAT
TGGCGGGAAG CGCCGCTCTT CGTCGTGCGT TCCGCCGACG ATCGTTCGGC GACATCGCCA
TCGGAAAACG CGCGGTCAAA CGACAGCCGC TCCTCCGTCG CGGCGCGCAC TCCCGATACC
GCCGAAGACT CGAACGCCCC GATCGTGGTC GCTCGCTCTG ACGGGGGGAC GCCCCGATGA
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| Protein sequence | MSGPRPAISH RDAGGRHHAV RRMAFLLLSG LALAAGATDA ALAQSVSAAR TVAGDPHAAF
VTEASQRFGI PEHWIVAVKR AESAGDVRAI SSAGALGLMQ VMPDTWAALR VRYGLGRAPY
DPRDNILAGA AYLREMFDRY RTIPAMLGAY NAGPGRYDEY VQTGRALPAE TRAYIALLAP
QLGAPSPSSA PPVAPPPPPD WREAPLFVVR SADDRSATSP SENARSNDSR SSVAARTPDT
AEDSNAPIVV ARSDGGTPR
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