Gene Plav_3446 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_3446 
Symbol 
ID5456224 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp3684151 
End bp3686919 
Gene Length2769 bp 
Protein Length922 aa 
Translation table11 
GC content64% 
IMG OID640879032 
ProductABC transporter related 
Protein accessionYP_001414703 
Protein GI154253879 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones54 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCACA GTGCGAGTGC GCAGCCCACG ACCGTTGCAA GCGTCCGTCA GGTGCGCTTG 
CGTTACGGCG ACGTCATCGC CCTGGATGGC ATCGATCTGG ACATTCCCGC CGGACGGATG
GTCGGCCTGA TCGGCCCCGA CGGCGTGGGC AAATCCAGTC TGCTCTCATT GCTGGCGGGT
GTGCGCATCA TCCAGGAGGG CACGGTCGAG GTGCTGGGTG GCGACATGGC CAGCAAGGCC
CATCGCAATA AAGTGTGCCC GCGCATCGCC TACATGCCGC AGGGACTGGG CAAAAACCTG
TATCCGACGC TCTCGGTCGA GGAGAATCTG CAATTCTTCG CGCGCCTGTT CGGTCATGGC
GCCGCAGAGC GCCGCCAGCG GATCGATGAG CTCACCCAGG CCACTGGCCT GTTCAAATTC
CTGGAGCGCC CGGCAGGCAA GCTGTCCGGG GGCATGAAGC AAAAACTCGG CCTGTGCTGC
GCGCTGATTC ATGACCCGGA TTTTCTGATT CTCGATGAGC CGACGACTGG CGTGGACCCG
CTGGCGCGCG CGCAGTTCTG GGATCTGATT GACCGTATCC GCGCCGATCG CCCCGGCATG
AGCGTGATCG TGGCCACGGC CTACATGGAT GAGGCCCAGC GCTTCGACTG GCTGGCCGCC
ATCGACGACG GCAAGGTCCT CGCCACCGGC ACGCCGAAGG AATTGCTGGC AAGAACAGGC
AGCCCGAACC TGGAAGAGGC ATTCATCCGC CTGCTCCCGG AAGAGAAAAA GCGCGGACAC
CAAGCGGTAG TCATTCCCCC CTTGTCGGAT GGCGGCGCGG ACGATATCGC CATCGAGGCC
GAGGGGCTGA CCATGCGCTT TGGCGACTTC GTTGCCGTCG ATAGCGTGTC CTTCCGCATC
CGGCGCGGTG AAATCTTCGG CTTCCTCGGC TCCAACGGGT GCGGCAAGTC CACGACGATG
AAGATGCTTA CCGGCCTGTT GCCGGCGAGC GAGGGTCGGG CCTGGCTGTT CGGCCATGAA
GTGGACCCGC ATGATCTGGA CACCCGCCGC CGCGTCGGCT ACATGTCCCA AGCGTTCTCG
CTCTACAGCG AAATCACGGT ACGCCAGAAC CTGGAGTTGC ACGCCAAACT CTTCAGTGTG
TCCCCGGAGG ACATTCCTGC TCGCGTCGAT GAGATGGTGG AGCGCTTCGG GCTGGTGGAC
GTCATCGACA GCCTGCCGGC CAGTCTGCCT CTGGGCATAC GCCAACGCCT GTCGCTGGCG
GTCGCCATGG TGCACAAGCC AGAACTGCTG ATTCTGGACG AACCGACTTC GGGCGTCGAC
CCGGTGGCGC GCGATGCGTT CTGGCGACTG CTCATCGAGC TGTCGCGGCG TGACCGGGTG
ACGGTCTTCA TTTCCACCCA CTTCATGAAC GAGGCAGAGC GCTGCGACCG CATGTCGATG
ATGCATGCGG GCAAGGTGCT CGACAGCGAC GTGCCCGCCA GACTGGTCGA GAAGCGCGGC
GCCAAAACCC TTGAAGAGGC CTTCATCGGC TACCTCGTCG AAGCCGAGGG CGGCACGGCG
GCGCCGGCCA GCCAGCCCGG GGCCGCCGAT CACGAGGAGC AACCATCGGC GGCGACCGCT
GAACACGGCG GGCACGGCTC TGGCGGTTTC AGTCTGCAGC GCATGTTCAG CTATCTGTGG
CGCGAGACGC TGGAATTGCA GCGGGACCCG GTACGCGCCA CGCTGGCGCT GGGCGGTTCG
CTGCTGCTGA TGTTCGTGAT CGGCTTCGGC ATCACCATGG ACGTCGAGGA CCTGAGCTAT
GCGGTGCTCG ATCGCGACCA GACCACGCTC AGCCAGAGCT ACACGCTGAA CCTGGCCGGC
TCGCGCTACT TCACCGAGCA CGCGCCGATC GTAGACTACG ACGATCTCGA CCGGCGGATG
CGTAGCGGCG AACTGTCGCT GGCCATTGAG ATCCCCCCTG GCTTCAGCCG CGACGTGTTG
CGGGGCCAGA ACGTGCAGAT CGGCGCCTGG CTCGACGGCG CCATGCCGCA ACGCGCGGAA
ACCGTGCAGG GCTACGTTCA AGGCATGCAC CAGCACTGGC TACTCGTACA GGCCAGCGAA
CGCAGCGGCG CCAGCGCCGC AGGCAATGCG AGCGTCGAGA CGCGCTTTCG CTACAACCCC
GATGTCAAGA GTCTGCCAGC CATGGTGCCG GCGGTGATCC CTCTGCTGCT GCTCATGCTG
CCGGCCATGC TGACTGCGCT GGCGGTGGTG CGCGAGAAAG AAACCGGGTC GATCACCAAT
CTGTACGTGA CGCCGGTCAC GCGCATCGAG TTCCTGCTCG GCAAGCAACT GCCCTATGTC
GGCCTGGCCA TGGTGAACTT CCTGCAGATG ACGCTGCTCG CGGTCACCAT CTTTGGCGTT
CCGGTCAAGG GCAGCTTTTT CACCCTGGCG CTGGCTGCGC TGATCTTCTC CTTCGCCGCG
ACAGGCATGG GGCTGCTGGC CTCGGCCGTC ACACGCAGCC AGATCGCCGC CATGTTCTTT
GCCATGATCG GCACGCTCAT ACCGGCCACC CAGTTTGCAG GTCTGATCGA TCCGGTGTCT
TCGCTCGAGG GCTCCAGCAA GTTCATCGGG CAGATCTATC CCGCCACGCA CATGATCTCC
ATCAGCCGTG GCGTTTTCAG CAAATCACTC GGCCTGGCCG ACCTGACGGG GCCGCTGTGG
TCGATGCTCT TGTCGGTCCC GGTCATTCTC GGCGCCGCCG TTTTGCTACT CAAGAAGCAG
GAGCGCTGA
 
Protein sequence
MSHSASAQPT TVASVRQVRL RYGDVIALDG IDLDIPAGRM VGLIGPDGVG KSSLLSLLAG 
VRIIQEGTVE VLGGDMASKA HRNKVCPRIA YMPQGLGKNL YPTLSVEENL QFFARLFGHG
AAERRQRIDE LTQATGLFKF LERPAGKLSG GMKQKLGLCC ALIHDPDFLI LDEPTTGVDP
LARAQFWDLI DRIRADRPGM SVIVATAYMD EAQRFDWLAA IDDGKVLATG TPKELLARTG
SPNLEEAFIR LLPEEKKRGH QAVVIPPLSD GGADDIAIEA EGLTMRFGDF VAVDSVSFRI
RRGEIFGFLG SNGCGKSTTM KMLTGLLPAS EGRAWLFGHE VDPHDLDTRR RVGYMSQAFS
LYSEITVRQN LELHAKLFSV SPEDIPARVD EMVERFGLVD VIDSLPASLP LGIRQRLSLA
VAMVHKPELL ILDEPTSGVD PVARDAFWRL LIELSRRDRV TVFISTHFMN EAERCDRMSM
MHAGKVLDSD VPARLVEKRG AKTLEEAFIG YLVEAEGGTA APASQPGAAD HEEQPSAATA
EHGGHGSGGF SLQRMFSYLW RETLELQRDP VRATLALGGS LLLMFVIGFG ITMDVEDLSY
AVLDRDQTTL SQSYTLNLAG SRYFTEHAPI VDYDDLDRRM RSGELSLAIE IPPGFSRDVL
RGQNVQIGAW LDGAMPQRAE TVQGYVQGMH QHWLLVQASE RSGASAAGNA SVETRFRYNP
DVKSLPAMVP AVIPLLLLML PAMLTALAVV REKETGSITN LYVTPVTRIE FLLGKQLPYV
GLAMVNFLQM TLLAVTIFGV PVKGSFFTLA LAALIFSFAA TGMGLLASAV TRSQIAAMFF
AMIGTLIPAT QFAGLIDPVS SLEGSSKFIG QIYPATHMIS ISRGVFSKSL GLADLTGPLW
SMLLSVPVIL GAAVLLLKKQ ER