Gene Plav_3351 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_3351 
Symbol 
ID5455082 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp3590380 
End bp3590934 
Gene Length555 bp 
Protein Length184 aa 
Translation table11 
GC content59% 
IMG OID640878941 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_001414612 
Protein GI154253788 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.311899 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones55 
Fosmid unclonability p-value0.696161 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGGCC GCTTCGAAAT CGTCGACACG CCGCTTGCGG GGCTGAAGCT GCTGCATCGC 
CGCCGGATGG GCGATGACAG GGGCTGGCTG GAGCGTCTGT TTTGCGCGGA TGAGTTGGCG
TCCGCTGGTT GGGTGTGGCC CATTGCCCAG ATCAACCGCA CACTGACCGT CAACAAGGGC
ACGGTGCGCG GTATGCATTT TCAACATCCG CCGCACGAAG AGGCTAAGCT CGTCACCTGC
CTCAGGGGCG AAGTGCTGGA CGTGGCGGTG GACCTCAGAA AAAACTCTCC CACCTATCTC
GGATGGCACG GAGAAATTCT GTCGGGAAAG AATGCCGCAA GCCTTCTCAT TCCGCCGGGA
TTTGCCCATG GCTTTCAGAC GCTGACATCC GATGTCGAAA TGTTCTATGT CCACTCCGCG
CCCTACGCGC CGCAAGCTGA GGACGGGGTA AGGGCGGACG ATCCGGCAAT TGCCATTGCA
TGGCCGCTGG AGATCGCCGA GCGTTCGGAA CGTGACCGGA ATTTTTCATT GGTCGAAGAA
AGAGAAGCAA AGTGA
 
Protein sequence
MTGRFEIVDT PLAGLKLLHR RRMGDDRGWL ERLFCADELA SAGWVWPIAQ INRTLTVNKG 
TVRGMHFQHP PHEEAKLVTC LRGEVLDVAV DLRKNSPTYL GWHGEILSGK NAASLLIPPG
FAHGFQTLTS DVEMFYVHSA PYAPQAEDGV RADDPAIAIA WPLEIAERSE RDRNFSLVEE
REAK