Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_3351 |
Symbol | |
ID | 5455082 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 3590380 |
End bp | 3590934 |
Gene Length | 555 bp |
Protein Length | 184 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640878941 |
Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
Protein accession | YP_001414612 |
Protein GI | 154253788 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 0.311899 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 55 |
Fosmid unclonability p-value | 0.696161 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGGCC GCTTCGAAAT CGTCGACACG CCGCTTGCGG GGCTGAAGCT GCTGCATCGC CGCCGGATGG GCGATGACAG GGGCTGGCTG GAGCGTCTGT TTTGCGCGGA TGAGTTGGCG TCCGCTGGTT GGGTGTGGCC CATTGCCCAG ATCAACCGCA CACTGACCGT CAACAAGGGC ACGGTGCGCG GTATGCATTT TCAACATCCG CCGCACGAAG AGGCTAAGCT CGTCACCTGC CTCAGGGGCG AAGTGCTGGA CGTGGCGGTG GACCTCAGAA AAAACTCTCC CACCTATCTC GGATGGCACG GAGAAATTCT GTCGGGAAAG AATGCCGCAA GCCTTCTCAT TCCGCCGGGA TTTGCCCATG GCTTTCAGAC GCTGACATCC GATGTCGAAA TGTTCTATGT CCACTCCGCG CCCTACGCGC CGCAAGCTGA GGACGGGGTA AGGGCGGACG ATCCGGCAAT TGCCATTGCA TGGCCGCTGG AGATCGCCGA GCGTTCGGAA CGTGACCGGA ATTTTTCATT GGTCGAAGAA AGAGAAGCAA AGTGA
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Protein sequence | MTGRFEIVDT PLAGLKLLHR RRMGDDRGWL ERLFCADELA SAGWVWPIAQ INRTLTVNKG TVRGMHFQHP PHEEAKLVTC LRGEVLDVAV DLRKNSPTYL GWHGEILSGK NAASLLIPPG FAHGFQTLTS DVEMFYVHSA PYAPQAEDGV RADDPAIAIA WPLEIAERSE RDRNFSLVEE REAK
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