| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3334 |
|---|
| Symbol | |
|---|
| ID | 5455703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3569861 |
|---|
| End bp | 3571774 |
|---|
| Gene Length | 1914 bp |
|---|
| Protein Length | 637 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640878924 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001414595 |
|---|
| Protein GI | 154253771 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 0.115349 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCATA TCAACGATCT GACCTTCCGA ATGGAGGGGC GCCTGCTCCT CGACCATGTC
ACCGCCGCCG TGCCCCCCGG GCAACGGACG GGCTTTGTCG GCCGTAACGG TACCGGTAAA
TCGACGCTGC TGAAGCTCAT CACGGGCGAA TATACGCCCG AGACGGGCGG TATCAGCTTT
CCGAAAAGCT GGCGCATCGG CATGGTCCGG CAAGAAGTGC TGGCCGGTCC GACGTCGCTT
CTCGACACGG TGCTTGCCGC CGATCTCGAG CGGTCATCGC TGCTCGCCGA AGCGGAGACG
GCGAGCGACC CTCACCGGAT TGCCGAGATC CATACGAGGC TGGCCGATAT GGGCGCCCAT
GCGGCCCCTG CCCGCGCGGC CACCATTCTT TCCGGTCTCG GCTTCGACGA GGCGGCGCAG
GCGCGGCCTT GCTCGGATTT CTCGGGCGGC TGGCGGATGC GCGTGGCTCT TGCGGCGGTG
CTCTTTTCGG AGCCCGACCT GCTGCTGCTC GACGAGCCGA CCAACTATCT CGATCTCGAA
GGCACGATCT GGCTTGAGGA CTATCTGCGG TCCTATCCCT ATACCGTGCT CATCGTCAGC
CATGACCGCG ACCTCCTGAA CAATGTCGCG CAGAACATCC TGCATCTCGA ACACAAGAAG
CTCACGGTCT ATAGCGGCAA TTACGACCGC TTCGACCGGA CGCGGCGCGA AAAGCTGATG
CTGCAGCTTT CGATGAAGAA GAAGCAGGAC GATGCGCGCC GCCACATGGA GAGCTTCATC
GAACGCTTCA AGGCGAAGGC GTCGAAGGCA CGCCAGGCGC AGAGCCGCAT GAAGGCGCTC
GCGAAGATGG AACCCATCGC CGACATATTG AACGAGCGCG TGCTGCCGTT CCGTTTTCCG
GCGCCAGACA AGCCGCTCGC CTCGCCGATC ATCCGGCTAG AACATGCGAG CGTCGGATAC
GAGCCCGGCA AGCCGGTGCT GAAGGATCTC GATCTCCGCA TCGACCAGGA CGACCGCATC
GCGCTTCTCG GTGCGAACGG CAACGGCAAG TCGACATTTG CGAAACTGCT ATGCGACCGG
TTGCAGGTGA CGGGCGGACA CAAATACGAT TCAAAGAAGC TGCGTATCGC TTATTTCGCG
CAGCATCAGC TCGACGAACT CAATATGGGC GATACGCCTT ACGAGCATTT CCGCGAGCTG
AAACCGGATG CGACGCAGGC ACAAGTGCGC GCCATTGCAG GCTCCTACGG GTTCGGCGCG
GACAAGGCGG ATACGAAAGT CGAGAAGCTT TCAGGCGGCG AGAAGGCACG CCTTTTGTTC
GCCATCGCGA CTTTTCACAA GCCGCACATG ATCATCCTCG ACGAACCGAC GAACCATCTG
GACGTCGACA GCCGCGAGGC GCTGGTCATG GCGATCAACG AATATGACGG CGCTTTCATT
CTGATTTCGC ATGACCGGCA TCTTGTCGAA ACATGCGCGG ATCGTTTGTG GCTTGTCGCG
GACGGAACCG TTGCGCCTTA TGATGGCGAT CTCAACGACT ACCGGAAATG GCTGCTCGAT
CCGGCGCGGC GCATCAAACC CCTGGTCGCG GAAGACGAAG AAGGAGAGGC CGCGCCTGCG
CCGGCACCTC GCCCATCGAA CGACAAGAAG GAAGCACGAC GCCTTGCCGC GCAGAAGCGC
GAGCAGATGG CGCCGTTAAA GAAAAAAGCT CAGGCCGCCG AGCAAGAGGT TGCGCGCATT
CAGAAAATCA TCGAAACGCT GACCGCGAAA CTTGGCGATC CGAAGGTCGC CGGAGACCCC
GGAGCGAGCG CCGCGACGGC GAAGGAACGG GCCGATGCGA TGAAGGCGCT GGCGCGGGCG
GAGGAGGCCT GGCTGGAGGC AAGCTCGGCC TATGAGGAGG CGATGGCGGA CTAA
|
|---|
| Protein sequence | MLHINDLTFR MEGRLLLDHV TAAVPPGQRT GFVGRNGTGK STLLKLITGE YTPETGGISF
PKSWRIGMVR QEVLAGPTSL LDTVLAADLE RSSLLAEAET ASDPHRIAEI HTRLADMGAH
AAPARAATIL SGLGFDEAAQ ARPCSDFSGG WRMRVALAAV LFSEPDLLLL DEPTNYLDLE
GTIWLEDYLR SYPYTVLIVS HDRDLLNNVA QNILHLEHKK LTVYSGNYDR FDRTRREKLM
LQLSMKKKQD DARRHMESFI ERFKAKASKA RQAQSRMKAL AKMEPIADIL NERVLPFRFP
APDKPLASPI IRLEHASVGY EPGKPVLKDL DLRIDQDDRI ALLGANGNGK STFAKLLCDR
LQVTGGHKYD SKKLRIAYFA QHQLDELNMG DTPYEHFREL KPDATQAQVR AIAGSYGFGA
DKADTKVEKL SGGEKARLLF AIATFHKPHM IILDEPTNHL DVDSREALVM AINEYDGAFI
LISHDRHLVE TCADRLWLVA DGTVAPYDGD LNDYRKWLLD PARRIKPLVA EDEEGEAAPA
PAPRPSNDKK EARRLAAQKR EQMAPLKKKA QAAEQEVARI QKIIETLTAK LGDPKVAGDP
GASAATAKER ADAMKALARA EEAWLEASSA YEEAMAD
|
|---|
| |