| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3305 |
|---|
| Symbol | |
|---|
| ID | 5456663 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3539735 |
|---|
| End bp | 3540304 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640878896 |
|---|
| Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
|---|
| Protein accession | YP_001414567 |
|---|
| Protein GI | 154253743 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
|---|
| TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 0.734768 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 0.233142 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGAGA TTCACTCAAC GTCCATACCG GAAGTGAAAG TGATGACGTC TTCCCGTGCC
ATAGACGGCC GGGGCTTTTT TGCCGAGACC TATTCGCGGC GCGATTTTAT CGAAATTGGA
ATCACCGCAG ATTTCGTGCA AGACAATGAA TCCTGGAACT CCGCTGCGGG CACGATACGT
GGCCTCCATT TCCAGCGTCC GGATTTCGCG CAAGCGAAGC TCGTGAGGGT GCTGTCCGGT
GCAATTCTCG ACGTCGCGGT GGATATTCGG GTCGGCTCGC CTACTTACGC CCAGCACGTA
GCCCTGGAGC TCGATGCCGC CGACAACAAG CAGATTTTCA TTCCCCGCGG CTTTGCGCAT
GGCTTCTGCA CATTGGCACC TGCTACCCAC GTAACTTATA AGGTCGATGC TTACTATTCC
GAGGCCCACG AATCGGGCTT GCTGTGGAAT GACCCAAATC TGGCCATTAA ATGGCCGGTG
GATTCGGCAG CGGCAATACT TTCCGAAAAA GATGCGGACC TGCCAGGATT TGCCGCCTTT
GAAAGTCCTT TCATGTTTGA AGCAGCTTGA
|
|---|
| Protein sequence | MIEIHSTSIP EVKVMTSSRA IDGRGFFAET YSRRDFIEIG ITADFVQDNE SWNSAAGTIR
GLHFQRPDFA QAKLVRVLSG AILDVAVDIR VGSPTYAQHV ALELDAADNK QIFIPRGFAH
GFCTLAPATH VTYKVDAYYS EAHESGLLWN DPNLAIKWPV DSAAAILSEK DADLPGFAAF
ESPFMFEAA
|
|---|
| |