| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3299 |
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| Symbol | |
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| ID | 5455878 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3528390 |
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| End bp | 3532124 |
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| Gene Length | 3735 bp |
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| Protein Length | 1244 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640878890 |
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| Product | ribonucleotide-diphosphate reductase subunit alpha |
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| Protein accession | YP_001414561 |
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| Protein GI | 154253737 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
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| TIGRFAM ID | [TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0441324 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 0.905318 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTATCC AGCGTTGTTT CACCGTCGAG GGTCAGTCGC CATATGAAGG CATCGCCTTC
AGGACGACGG CGAGCGAAAT CCGCAATCCC GACGGCTCCG TCGTGTTCCG GCTGCAGGAC
ATCCAGGTGC CCGCCGAATG GAGCCAGGTG GCCTGCGACG TGCTGGCCCA GAAATATTTC
CGCAAGGCGG GCGTCGCCGC CGTGCTGAAG CGCGTGCCCG AGGCCGGTGT CCCGGCCTTC
CTGTGGCGGC AGGAGCCGGA TCATGAGGCG CTCGAGGCGC TGCGGCCGGA AGATCGTTTC
GGCCCCGAGA TGGACGCGAG GCAGGTCTTC GACCGGCTGG CCGGCACATG GACCTATTGG
GGCTGGAAGG GCGGCTATTT CGACAGCGAG GCCGACGCGC AGGCCTTTTT CGACGAGCAC
CGTTTCATGC TGGCGGCGCA GATTGCCGCG CCCAACTCCC CGCAATGGTT CAATACCGGC
CTTCACTGGG CCTATGGCAT CGACGGCCCG GCCCAGGGCC ATTGGCGCAC CGACCCCGCC
ACCGGCGAAA CCGCGCGCAC GGCCACGGCC TACGAATATC CGCAGCCCCA TGCCTGCTTC
ATCCAGAGCG TGAACGACGA TCTCGTGAAC GAGAACGGCA TCATGGATCT CTGGGTCCGC
GAGGCGCGGC TCTTCAAATA TGGCTCCGGC ACCGGCTCCA ACTTCTCGGA TCTGCGCGGC
GAGGACGAAA AGCTTTCGGG CGGCGGCAAG TCGTCGGGCC TGATGAGCTT CCTCAAGATC
GGCGACCGGG CGGCCGGCGC GATCAAATCC GGCGGCACGA CGCGCCGTGC GGCGAAAATG
GTGATCGTCG ATATCGACCA CCCGGATGTC GAGGACTTCA TCAACTGGAA GGTGAAGGAA
GAACAGAAGG TGGCGGCGCT CGTCACCGGC TCGAAGATCA ACCAGAAACA CCTCAACGCC
ATTATGCGCG CCTGCGTGAA TTGCGAGGCG GATGGCGACG CCTGTTTCGA CCCGAAGAAG
AACCCCGCCC TCAAACGCGA AGTGCTGGCG GCGCGCAAGG CGCATGTGCC GGAAAACTAT
GTGCAGCGCG TGATCCAGTT CGCAAAGCAG GGCTACGACG AAATCGACTT CCGGGTCTAC
GACACGGATT GGGACTCCGA GGCCTATCTC ACCGTCTCGG GCCAGAACTC GAACAACACC
GTTCGCGTCA CGGATGATTT CCTGCGCGCG GTGGAAGAGG ATGCGGAGTG GTCGCTGAAA
AGCCGCCTCA CCGGCGAGGC CACGAAGACC CTGCCCGCCC GCGAACTCTG GGAGCAGGTC
GGCCATGCCG CATGGGCGAG CGCCGATCCG GGCATCCAGT ATCACACCAC CATCAACGAC
TGGCATACCT GCCCCGCTTC CGGGCCGATC CGCGCCAGCA ATCCGTGCTC GGAATATATG
TTCCTCGACG ACACGGCCTG CAACCTCGCC TCGATCAACC TGATGCAGTT CCGCGACGCC
GATGGCCGTT TCGATGTCGA GGCGTTTGAG CATGCCGTAA AGCTTCTCAC CATCGTGCTG
GAAATTTCCG TCCTGATGGC GCAGTTCCCG AGCCGGGAAA TCGCGGAGCG GAGTTTCCGC
TACCGCACGC TCGGCCTCGG CTTCGCCAAT ATCGGCGGCC TGCTCATGTC CTGCGGCCTT
GCCTACGATT CAGCCGAAGC GCGCGCACTC GCGGGCGCGA TCAGCGCCAT CATGACCGGC
GTTTCCTATG CGACCTCCGC CCAGATGGCG AAGGAACTCG GCGCCTTCGA AGGCTATGCG
GAAAATTCCG CTCACATGCT GCGGGTGATG CGCAACCATG CGCGCGCCGC GCATGGCTAC
AATGGCGGCT ATGAAGACCT CAGCGTCTAT CCGCTCGCGC TCGACGCAGC AAACTGCCCG
CAAGCCGATC TCGTCGATCA CGCCCGCGCC TCCTGGGATC TCGCGGTCTC GATGGGCGAA
CGCTACGGCT ATCGCAATGC GCAGGCGACC GTCATCGCGC CCACAGGCAC GATCGGCCTT
GTCATGGATT GCGACACAAC CGGCATCGAG CCCGATTTCG CGCTGGTGAA ATTCAAGAAG
CTCGCGGGCG GCGGCTATTT CAAGATCATC AACCGCGCCG TGCCGCAGGC GCTCCGCACG
CTCGGCTATG ACGCTGCCGC CATCGAGCGG ATCGTCAATT ATGCCGTCGG TTTCGGAACG
CTCGCCAATG CGCCGGGCGT GAGCCATGAA CGCTTGCGGG AGCTCGGCTT CACGCAGGAA
AAGATCAACA TCGTCGAAGA GGCACTCGCC GGTGCTTTCG ACATCCGCTT CGTCTTCAAC
AAGTGGCAGC TTGGCGAGGA ATTCTGCACC GATGTGCTCG GCCTCGATGC CGATGCAATG
GACGATCTCG ATTTCGACCT CCTCGCCGCC ATCGGCTTCA CCAAGCAGGA GATCGACGCC
GCCAACCTTC ATGTCTGCGG TGCGATGACG CTTGAAGGCG CGCCGGGCCT GAAGGACGAA
CACCTTCCCG TCTTCGATTG CGCCAATCCC TGCGGCCGCA TCGGCAAACG CTATCTCTCG
GTCGAAAGCC ATATCCGCAT GATGGCGGCG GCGCAGCCTT TCATCTCGGG CGCCATCTCC
AAGACCATCA ACATGGCCAA TGCGGCAACG GTCGAGGATT GCAAGGAAAG CTACATGCTG
TCCTGGAAGC TCGGCCTGAA GGCGAATGCG CTTTACCGCG ACGGCTCGAA GCTGTCACAG
CCGCTCAACT CGCAGCTTCT CGAAGATGAA GCCGATGACG AAGCGGAAGA AAGTGCCGTC
GAAACGCTGA TGGCGCAGGC GCCGCAGGAA CGCGCCCGCG TGGTCGCGGA GCGCAGCGTG
GCGCAGCTTG TCGAACAGGT GAAGTCGGCG GAGCAGAAGC GCGAGAAGCT TCCCGACCGC
CGCAAGGGCT ATACGCAGAA GGCGCTGGTC GGCGGCCACA AGGTCTATCT CCGCACCGGC
GAATATGATG ACGGCAAGAT CGGCGAAATC TTCATCGACA TGCACAAGGA GGGCGCCGCC
TTCCGCTCGC TGATGAACAA TTTCGCCATC GCGATTTCGC TCGGCCTCCA ATATGGCGTG
CCGCTGGAGG AATATGTCGA GGCCTTCACC TTCACGCGCT TCGAGCCGGC GGGCCTTGTC
CAGGGCAATG ACCGGATCAA GAATGCGACC TCGATCCTCG ATTATGTCTT CCGCGAACTC
GCCGTCTCCT ATCTCGGCCG CTCCGATCTC GGCCATGTCG ATCCGAAGGA ATTCGCCTTC
GACGCCATGG GCGACGGTGC CGACGAAGGC AAGGCACCTG CCCTCCCCGC CTCCGCCGTG
GTAAGCCCCG GCTACACGCG CAATGCGCAG ATGGGGAACC TTTATCTCGT GCGCGGCGGC
GCGGCGGCTA CGGCCCGCGC CGACACGGCG GAAGCCGTCG CCGCGCCCGC GGTCCGCGAG
CAGACGGTGA AAGCCGAAGT CATGGCCGCC GGCGCCTTGA TGCGCGCCGG CTCGTCCGAA
AGCTTCGCGG CAGTTGCCGT CGGCGCCGTA TCGTCAGGGG GCGGATCATC CGGCGGCGGC
ATCAGCCGCG CCGCCGAAGC CCGCATGAAA GGCTATGAAG GCGAAGCCTG CAGCGAATGC
GGCAACTTCA CGATGGTCAG GAACGGGACG TGTTTGAAGT GCGATACGTG CGGCGGGACC
AGCGGGTGTA GCTGA
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| Protein sequence | MRIQRCFTVE GQSPYEGIAF RTTASEIRNP DGSVVFRLQD IQVPAEWSQV ACDVLAQKYF
RKAGVAAVLK RVPEAGVPAF LWRQEPDHEA LEALRPEDRF GPEMDARQVF DRLAGTWTYW
GWKGGYFDSE ADAQAFFDEH RFMLAAQIAA PNSPQWFNTG LHWAYGIDGP AQGHWRTDPA
TGETARTATA YEYPQPHACF IQSVNDDLVN ENGIMDLWVR EARLFKYGSG TGSNFSDLRG
EDEKLSGGGK SSGLMSFLKI GDRAAGAIKS GGTTRRAAKM VIVDIDHPDV EDFINWKVKE
EQKVAALVTG SKINQKHLNA IMRACVNCEA DGDACFDPKK NPALKREVLA ARKAHVPENY
VQRVIQFAKQ GYDEIDFRVY DTDWDSEAYL TVSGQNSNNT VRVTDDFLRA VEEDAEWSLK
SRLTGEATKT LPARELWEQV GHAAWASADP GIQYHTTIND WHTCPASGPI RASNPCSEYM
FLDDTACNLA SINLMQFRDA DGRFDVEAFE HAVKLLTIVL EISVLMAQFP SREIAERSFR
YRTLGLGFAN IGGLLMSCGL AYDSAEARAL AGAISAIMTG VSYATSAQMA KELGAFEGYA
ENSAHMLRVM RNHARAAHGY NGGYEDLSVY PLALDAANCP QADLVDHARA SWDLAVSMGE
RYGYRNAQAT VIAPTGTIGL VMDCDTTGIE PDFALVKFKK LAGGGYFKII NRAVPQALRT
LGYDAAAIER IVNYAVGFGT LANAPGVSHE RLRELGFTQE KINIVEEALA GAFDIRFVFN
KWQLGEEFCT DVLGLDADAM DDLDFDLLAA IGFTKQEIDA ANLHVCGAMT LEGAPGLKDE
HLPVFDCANP CGRIGKRYLS VESHIRMMAA AQPFISGAIS KTINMANAAT VEDCKESYML
SWKLGLKANA LYRDGSKLSQ PLNSQLLEDE ADDEAEESAV ETLMAQAPQE RARVVAERSV
AQLVEQVKSA EQKREKLPDR RKGYTQKALV GGHKVYLRTG EYDDGKIGEI FIDMHKEGAA
FRSLMNNFAI AISLGLQYGV PLEEYVEAFT FTRFEPAGLV QGNDRIKNAT SILDYVFREL
AVSYLGRSDL GHVDPKEFAF DAMGDGADEG KAPALPASAV VSPGYTRNAQ MGNLYLVRGG
AAATARADTA EAVAAPAVRE QTVKAEVMAA GALMRAGSSE SFAAVAVGAV SSGGGSSGGG
ISRAAEARMK GYEGEACSEC GNFTMVRNGT CLKCDTCGGT SGCS
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