| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3278 |
|---|
| Symbol | |
|---|
| ID | 5454497 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3507917 |
|---|
| End bp | 3510508 |
|---|
| Gene Length | 2592 bp |
|---|
| Protein Length | 863 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640878869 |
|---|
| Product | ribonuclease |
|---|
| Protein accession | YP_001414540 |
|---|
| Protein GI | 154253716 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1530] Ribonucleases G and E |
|---|
| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.027998 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAAGA AGATGCTGAT CGATGCGGCC CACCCCGAAG AAACCCGGGT AGTGGTCGTA
AGCGGCAATC GCGTTGAAGA GTTCGATTTC GAGTCAGAAA ACAGGAAACA GCTTCGGGGA
AATATCTACC TAGCCAAGGT TACGCGCGTC GAACCGTCGC TTCAGGCGGC GTTCGTCGAA
TATGGCGGCA ATCGTCACGG CTTCCTCGCC TTCAGCGAAA TCCATCCCGA CTACTACCAG
ATCCCGGTGG CCGACCGCGA AGCCCTGCTG AAGCAGCAGG CCGACGAGGC GCGCCGCGAG
AAGGAAGAAG AAGACGAAGA CGACGCGGAA GAAGCGCCCT CCGCGAAGGC CGACGGAAAC
GGCGGACAAG ACGCCGAAGA CCATGGCGAC GACCACAGCG GCGACATCGA ACGCGGCGAA
ACCGAGACGG TTCTCTCCGA CGAGACGGTC GAATCCGTCG GTGCGGAAGA CGCGATGGAA
GAAGCCGCGC CGCGCAAGCA GCGGGGCAAT TACCGCTCCT ATAAAATTCA GGAAGTCATC
AAGCGGCGGC AGATCCTGCT GGTGCAGGTC GTGAAGGAAG AGCGCGGCAA CAAGGGCGCG
GCTCTCACCA CATATCTGTC GCTCGCCGGA CGCTATTGCG TGCTGATGCC GAACACGGCG
CGGGGCGGCG GCATTTCCCG CAAGATCACC GTGGCGGCCG ACCGCAAGAA GCTCAAGGGC
ATTGCCGAGT CTCTCGATGT GCCGGAAGGC ATGGGCCTTA TCGTCCGCAC GGCGGGCGCC
AAGCGCACCA AGGCGGAGAT CAAGCGCGAC TATGAATATC TGCTGCGCAT GTGGGAGAGC
GTGCGCGAGC TGACGCTGAA ATCAACGGCG CCCTATCTCG TCTATGAGGA AGGCAGCCTG
ATCAAGCGGT CGATCCGCGA TCTCTACGAC AAGGATATCG ACACCATCCA GATCGAGGGT
GACGAAGGCT ACCGCGAGGC CAAGGGCTTC ATGCGGATGC TGATGCCGAG TCACGCCAAG
AATGTGCAGC CCTACAAGGA AACGCAGCCG CTGTTCCAGA AGTTCGGCAT CGAGCAGCAA
CTCGACGCGA TGCTGGAGCC GACGGTGACG CTGAAATCGG GCGGCTATAT CGTCATCAAT
CCGACGGAAG CACTGGTTTC GATCGACGTG AACTCGGGAC GTTCCACCAA GGAACGCAAC
ATCGAGCAGA CGGCGCTGAA GACCAACCTC GAAGCAGCGG AAGAAATCAC GCGGCAGATG
CGCCTGCGCG ACCTTGCCGG TCTCGTCGTC ATCGACTTCA TCGACATGGA CGAGAACCGC
AACAACCGCG CGGTCGAACG CAAGCTCAAG GATTGCCTGA AGACGGACCG GGCCCGCATC
CAGGTGGGCC GCATCAGCCA TTTCGGGCTT CTCGAAATGT CGCGCCAGCG GATGCGCTCC
GGCGTGCTCG AAGGCTCGAC CGTCACCTGC CAGCACTGCA AGGGCACGGG CCTTGTGCGC
TCGGTAGAAT CCATGGCGCT GCATGTGCTG CGCGGTGTGG AAGCCGAAGC GATCAAGGGC
CGCGCCGCCG CCTTCACCGT GAAGGTGCCT GCTGTCGTCG CGATCTACAT TCTCAACCAG
AAGCGCGCGA AGATTCTCGA CGTCGAAGAG CGTTACGGCA CCTCGGTCTA TATCGAGGCC
GATGCGACGC TGACCGGCTC CGAGCACCGG ATCGAACCGG CGGAAGCCCG CGCGCTGACG
CGCACGCGGC CGGCGCAGGG CGCGATCAAC ATTGAAAGCG GCTATGCGGA CGAAGAAGAC
GAGCCCGTAA TAGCCGAGAC CGAAGACGAG GCGGATGACG AAGCCGAGGC GGCGGAAGCG
AGCGGCGACA GTGCCGACCG CAACCGGGCA GACAATGCCG AGGGCGACGG ACAGCGCCGC
CGCAAGCGCC GCCGCCGCAA GCGCAAGCCC GACGGCGAAC GCGCCGAGGG CGAGACGCAG
CAGGATGCGC AAGGCCGCGA CGAAGATGGA GACGAGGACG GCGAGGAGAC GGGAGAGGCT
TCCGAAGCCC AGCCCGGCGA GACGTCCGGC ACTGCCGAGG GCGAAGACGG CGAAGGCGCA
CGCAAGCGCC GCCGCCGGGG ACGCCGTGGC GGACGCCGCA ACCGCCGCCG CGGAGAGGAA
GGCACCGAGA CCGGCGCCAC CCGGGACGGC GCCAGCGCCG AGGGCAATGA CGAAGGCGAG
TTCGAAGCGG GCGACGCCGG TACGATAGCG GACGAGGCCA CGGTCTCCGC CGACGATGTG
CCGGTGCTGC TGTCCTATTC GCGCGCCGAT GCCGAGGCTC ACGCGCCGAA CGACCCGGTG
GCGGAAGACG AAGAGACATG GGACGCGGAA GCCGCCGAGG AAGGCGCCTA TGCCGACACC
GCCGCCGATG CGGAAGCCGA CGCAGAGGAA GCTGAGGCGG AAGAAGAGGA AAGCGCGGCC
GAGCCTGAAA GGCGCGAGGC CGAAATGGCC GATGCCGAAG GCGGTGCGCC GATGACCGGC
GAAGCGCCAG GCGCGGAAGC CGAACCGCGC GAGAGCGAGC CTTCGCGTCG CGGCTGGTGG
CAGCGGCGCT AG
|
|---|
| Protein sequence | MGKKMLIDAA HPEETRVVVV SGNRVEEFDF ESENRKQLRG NIYLAKVTRV EPSLQAAFVE
YGGNRHGFLA FSEIHPDYYQ IPVADREALL KQQADEARRE KEEEDEDDAE EAPSAKADGN
GGQDAEDHGD DHSGDIERGE TETVLSDETV ESVGAEDAME EAAPRKQRGN YRSYKIQEVI
KRRQILLVQV VKEERGNKGA ALTTYLSLAG RYCVLMPNTA RGGGISRKIT VAADRKKLKG
IAESLDVPEG MGLIVRTAGA KRTKAEIKRD YEYLLRMWES VRELTLKSTA PYLVYEEGSL
IKRSIRDLYD KDIDTIQIEG DEGYREAKGF MRMLMPSHAK NVQPYKETQP LFQKFGIEQQ
LDAMLEPTVT LKSGGYIVIN PTEALVSIDV NSGRSTKERN IEQTALKTNL EAAEEITRQM
RLRDLAGLVV IDFIDMDENR NNRAVERKLK DCLKTDRARI QVGRISHFGL LEMSRQRMRS
GVLEGSTVTC QHCKGTGLVR SVESMALHVL RGVEAEAIKG RAAAFTVKVP AVVAIYILNQ
KRAKILDVEE RYGTSVYIEA DATLTGSEHR IEPAEARALT RTRPAQGAIN IESGYADEED
EPVIAETEDE ADDEAEAAEA SGDSADRNRA DNAEGDGQRR RKRRRRKRKP DGERAEGETQ
QDAQGRDEDG DEDGEETGEA SEAQPGETSG TAEGEDGEGA RKRRRRGRRG GRRNRRRGEE
GTETGATRDG ASAEGNDEGE FEAGDAGTIA DEATVSADDV PVLLSYSRAD AEAHAPNDPV
AEDEETWDAE AAEEGAYADT AADAEADAEE AEAEEEESAA EPERREAEMA DAEGGAPMTG
EAPGAEAEPR ESEPSRRGWW QRR
|
|---|
| |