| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3234 |
|---|
| Symbol | |
|---|
| ID | 5456678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 3452164 |
|---|
| End bp | 3453465 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640878824 |
|---|
| Product | Orn/DAP/Arg decarboxylase 2 |
|---|
| Protein accession | YP_001414496 |
|---|
| Protein GI | 154253672 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.17502 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGCTT CCGAGCAGGG CCGCCGTGCC CGTTCGCGCA TCTCCATGAA ATCCGCCGCG
AAGTCGGTTC CCGCCACTAA GCCGGGTGCG CCCGTCAAGT CGGGTCCGCG TCGCAAGCCT
CGTCTGCGGC TCGTGCCGAA GGCGGCCGAG CTGCCGCTGG ATCGCGGCGG CCTGCCGCCC
AAGATCGCGC GCTATCTCGC GACCGCCGAT CTGCCGTCGC CTTGCCTCGT TGTCGACGTC
GACATCGTCG CCCACAACTT CGGGGAACTG GCCAGCTCGC TTCCCGATGC GCGCATCTTC
TATGCCGTGA AGGCGAACCC TGCCGACGAG ATCGTCTCCC GCCTCGCGGG CCTCGGCTCG
TCCTTCGACA CCGCCAGCAT GGGCGAGATC GACCTCTGCC TCTCGCACGG GGTTTCGGCC
GACCGTCTGT CCTTCGGCAA CACGATCAAG AAGGAGCGCG ACATCGCGGC TGCCTATGCC
AAGGGCGTCC GCATGTTCGC CTTCGACAGC ACCGCCGAGC TCGACAAGAT CGCGCGCGTC
GCTCCGGGAT CGAAGGTCTA TTGCCGCGTG CTCATGGAAT GCGAAGGCGC CGAATGGCCG
CTCTCGCGCA AGTTCGGTTG CGAGCCGGCC ATGGCCGTTG ACCTGCTCGT GCGCGCGAAG
GCCCTCGGCC TCGATGCCTA TGGCGTGTCG TTCCACGTCG GCTCGCAGCA GACCGATCTC
ACGCAATACG ACAAGGCGCT GGCCCTTTCG CTGTCGCTCT TCCGCGATCT CGAAGCGCGT
GGCGTCAAGC TTCGCATGGT CAACATGGGC GGCGGTTTCC CGTCCCGCTA CCGCACCGAT
GTGCCCTCGA TCTCCGCCTA CGGCGCGGCG ATCCGTGAGG CACTTTTGCG ACACTTTGGT
GACAGTCAGC CGGATGTCAT CGTCGAACCG GGCCGCGGCG TCGTCGGCGA TGCCGGTGTC
ATCCAGGCAG AAGTCGTTCT CGTCTCGGAG AAGGGCGGCG ACGACGCCCG ACGATGGGTC
TATCTCGATG CCGGCAAGTT CCACGGCCTC GCCGAAACCA TGGACGAGGC GATCAAATAC
CGCCTCCTGA CATCGCGCGA TGGCGGCGAG ACCTCGCCAG TCGTCCTTGC CGGTCCGACC
TGCGACAGTG CCGACATCCT CTACGAGAAG ACGGACTATC GTCTCCCGTC GGAGCTGGAG
GCTGGCGACA AGGTCTGGAT CCTCGCCACG GGCGCCTACA CGACGACCTA CTCGGCCGTC
GCGTTCAATG GCTTCCCGCC GCTGGCAAGC GTCTGCATCT GA
|
|---|
| Protein sequence | MFASEQGRRA RSRISMKSAA KSVPATKPGA PVKSGPRRKP RLRLVPKAAE LPLDRGGLPP
KIARYLATAD LPSPCLVVDV DIVAHNFGEL ASSLPDARIF YAVKANPADE IVSRLAGLGS
SFDTASMGEI DLCLSHGVSA DRLSFGNTIK KERDIAAAYA KGVRMFAFDS TAELDKIARV
APGSKVYCRV LMECEGAEWP LSRKFGCEPA MAVDLLVRAK ALGLDAYGVS FHVGSQQTDL
TQYDKALALS LSLFRDLEAR GVKLRMVNMG GGFPSRYRTD VPSISAYGAA IREALLRHFG
DSQPDVIVEP GRGVVGDAGV IQAEVVLVSE KGGDDARRWV YLDAGKFHGL AETMDEAIKY
RLLTSRDGGE TSPVVLAGPT CDSADILYEK TDYRLPSELE AGDKVWILAT GAYTTTYSAV
AFNGFPPLAS VCI
|
|---|
| |