| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3081 |
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| Symbol | |
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| ID | 5456929 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3289376 |
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| End bp | 3292891 |
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| Gene Length | 3516 bp |
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| Protein Length | 1171 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640878670 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001414345 |
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| Protein GI | 154253521 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.195799 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 0.080304 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAGAAAC TCACCGAAAT CGTCACGGCG CCGGGCCGGC TGACCCTGGG CGAAACGCCC
GAGGGCTTCG ATGCGCTGGT GCTGGCCGAT ATGGCCCGCC AGATGCCTGC GGATAGCGGA
CTAACGCTGC TCCATGTGGC GCGCGATGAT GCCCGCATGG CCGCGCTGGC CGAGGCGCTC
GCCTTCTTTG CGCCGGATAT CGAGATTGAA ATCTTCCCCG CGTGGGATTG CCTCCCCTAT
GACCGTGTCT CACCGAACGC GGAGATCAGC GCGCGGCGAA TGGCGGCCCT CTCGCGGCTC
GTCGCGAGAG AGCAGAAAGG GGAGGGAAAG CGGCTCATCC TTCTCGCGAC AGTCAATGCG
GTTCTGCAGC GTGTTCCCGC GCGCGATACC GTGCGGACCT CCGCCTGGTC GGCGCGAACG
GGCAATCGCA TCGATCTCAA TGAGCTCACC GGCTATCTGG CGGCCAATGG CTACAGCCGC
ACAGGTACCG TCCGGGAGGC GGGTGAGTTT GCCGTTCGTG GCGGTATCGT CGATATTTTC
CCATCCGGAT TTGAACTTCC GGTCCGGCTC GACATGTTTG GCGACACGCT TGATGCCATT
CGCAGTTTCG ACGCCGTTAC GCAGCGCACG GTCGGTCAGC TGCATGGGCT CGATCTCGTT
CCCGCGAGCG AGGTTCATCT CGACAAGGAA GCCATCCGCC GTTTCCGGGC AGCTTATGTT
GCAACGCTCG GCGCGGTGAC CGATGGCGAC CCGCTCTACG AAGCTGTCAG CGAGGGGCGC
AAGCATGCCG GTATGGAACA CTGGCTGCCG CTCTTCCATG AACAGCTCGA GACCTTGTTT
GACTATGTGC CCGGCGCGTT GGTCACGCTC GATGCGCAGG CGGAGGATGC GAAGGCAGCC
CGTCTCGAAC TGATCGGCGA TTACTACGAA GCCCGCGTTG ATGCACGAAA GACGGCCCGC
GAAGCCAAGC TCGCTGTCGA CGCCCCAAGC TACAAGCCGC TCAAGCCCGA GGCCCTCTAT
CTGACCGAGG AAGAGTGGGG GGCAACGATG GGCGCACATC GCGTGCGTGC CTTGACGCCG
TTCAGCGTTC CAGAAACGGC GGGGATAAAT CTCGGCGGCA AGCAGGGCCG CAATTTTGGA
CCGGAACGCG CGCAGGATGG CGTGAATGTG TTCGAGGTGC TGGGCGGGCA CATCCTAGGA
TTGCGCCGCG CAGGCAAGCG CGTCGCGATA GCAAGCTGGA GCGAAGGCGC TCGGGACCGT
CTGCAGCATG TCTTGTCCGA TCATGGTATC GGAAATGTTC TCATCGCCGA TAGCTGGGCG
GATGTTAACG GCGTTAACAA AAGCACTGTT TCACTGATTG TTCTCGGACT TGAGGCCGGA
TTCGAGACGG ATGAGATCGC GCTGATCAGC GAACAGGATG TGCTCGGAGA CCGCCTTGTC
AGGCAGCGCC GCAAAAAAAG AGCGGAAAAC TTCCTCACCG AAGCCTCCAG CCTTTCGCCG
GGCGACCTCG TTGTCCATGT CGATCACGGC ATCGGCCGGT TCGAGCGTCT ACAAACCATC
GAGGTCATGG GCGCGCCGCA TGATTGTCTG CTCCTCATTT ATCACGGCGG GGACAAGCTC
TATCTGCCGG TCGAGAATAT CGAGCTTCTG TCGCGCTACG GCTCTGATGA TTTGGATGCG
CAGCTGGACC GCCTTGGCGG CACCGGCTGG CAGGCGCGGA AGGCGCGGCT TAAAGAACGT
ATTCGCGAGA TGGCGGGTGA GCTCATCAAG ATCGCTGCCG CGCGTGAGCT CAAAACCGCT
CCCGCAATGG AGCCGCAGCC GGGTGCCTAT GACGAGTTCT GCGCGCGCTT TCCCTTCACG
GAAACGGAAG ACCAGGAACA GGCAATCGAT GCTGTGCTGG AAGATCTGGC GCGCGGCCGG
CCCATGGACC GGCTCGTTTG CGGCGATGTC GGTTTCGGCA AGACTGAAGT CGCCCTGCGG
TCGGCCTTCG TCGCCGCTCT CGCCGGTTTC CAGGTTGCCG TTGTCGTTCC GACGACACTT
CTTGCGCGAC AACACTACCG GACCTTTGCC GCCCGCTTCC AGGGCTTGCC GGTCAGGGTC
CGGCAGATGT CGCGTCTTGT TTCCGCGAAG GACATGGCGG AGGCGAAGGA AGGACTTGCA
AGCGGGCAGG TCGATATCGT CATCGGTACG CATGCTCTGC TCGGCAAACA GGTCAAGTTT
CGTAACCTCG GTCTGGTGAT CGTGGACGAG GAGCAACATT TCGGAGTCGT TCACAAGGAA
CAGTTGAAGA AGCTGCGCGC CGAAGTTCAC GTCCTGACAC TGACAGCGAC ACCGATTCCG
CGCACCTTGC AGCTCGCCTT GTCGGGCGTG CGCGAACTCT CTCTCATTGC GACGCCGCCG
GTCGACCGGC TTGCCGTCCG CACCTATGTC TCGCCCTTCG ATCCTGTGGT GGTCCGCGAA
GCGCTTCTGC GTGAACATTT CCGCGGCGGG CAGAGCTTCT ATGTCGTGCC GCGCATTGCC
GACCTTGCGG AAGCAGAAGA GTTCCTTCGG CAGTATGTGC CTGAAGTGAA ATTTGTTTTG
GCTCATGGCC AGATGGCGGC GGGTGAAATC GAAGACAAGA TGACGGCCTT CTACGACGGG
AAGTACGACG TGCTCGTTTC GACGACCATT GTGGAGTCCG GCCTCGATAT TCCGACCGCC
AATACGCTTG TCGTGCATCG AGCCGATATG TTCGGGCTCT CGCAGCTCTA TCAGTTGCGC
GGTCGCGTCG GCCGGTCCAA GGCGCGCGCC TATGCATATC TCACTGTGCC TGCGAACCGT
ACGCTTACAG CAGGCGCCGA CAAGCGGCTT CGCGTATTGC AGTCGCTCGA CTCGCTGGGC
GCGGGGTTCT CTCTTGCAAG CCACGATCTC GATATTCGCG GTGCGGGCAA TCTTCTTGGC
GACGAGCAAT CGGGTCATAT CAAGGAAGTC GGATACGAGC TTTACCAGGA GATGCTGGAA
GAGGCGGTTG CCTCGATGCG TGGCGGCGGC GCCGGTGCCG ACGAGGAAGG CCATTGGTCG
CCTCAGATCA GTGTCGGAAC ACCCGTCCTC ATTCCGGACG GCTATGTGCC GGATCTCGAT
GCGCGGATGG CTCTTTACCG GCGGCTTTCC GACGTTGAAA CAAGATCGGA GATCGACGGT
TTTGCGGCGG AACTCATTGA CCGTTTCGGC AAGCTTCCGC AGGAAGTCGA GTTCCTGCTG
AAGATTGTGG AGATCAAGGG GCTTTGCCGA ACGGCGAATG TGGAAAAGAT CGAAGCGGGC
CCGAAAGGCG TCGTACTTTC TTTCCGCGAG AACAGCTTTC CCAATCCAGC CGCGCTTGTC
GAGGTCATCA ACGACGAACG CGGCAACGCG AAGCTTCGGC CGGATCACAA GCTTGTCTTC
AAGCGCGATT GGGATACGCC GGAAGAGCGC CTTGCCGGCA CGCACCGTCT GATGACGACG
CTGGCAAAGC TCGCCGCGCC GGCAAAGGCA GCCTGA
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| Protein sequence | MKKLTEIVTA PGRLTLGETP EGFDALVLAD MARQMPADSG LTLLHVARDD ARMAALAEAL
AFFAPDIEIE IFPAWDCLPY DRVSPNAEIS ARRMAALSRL VAREQKGEGK RLILLATVNA
VLQRVPARDT VRTSAWSART GNRIDLNELT GYLAANGYSR TGTVREAGEF AVRGGIVDIF
PSGFELPVRL DMFGDTLDAI RSFDAVTQRT VGQLHGLDLV PASEVHLDKE AIRRFRAAYV
ATLGAVTDGD PLYEAVSEGR KHAGMEHWLP LFHEQLETLF DYVPGALVTL DAQAEDAKAA
RLELIGDYYE ARVDARKTAR EAKLAVDAPS YKPLKPEALY LTEEEWGATM GAHRVRALTP
FSVPETAGIN LGGKQGRNFG PERAQDGVNV FEVLGGHILG LRRAGKRVAI ASWSEGARDR
LQHVLSDHGI GNVLIADSWA DVNGVNKSTV SLIVLGLEAG FETDEIALIS EQDVLGDRLV
RQRRKKRAEN FLTEASSLSP GDLVVHVDHG IGRFERLQTI EVMGAPHDCL LLIYHGGDKL
YLPVENIELL SRYGSDDLDA QLDRLGGTGW QARKARLKER IREMAGELIK IAAARELKTA
PAMEPQPGAY DEFCARFPFT ETEDQEQAID AVLEDLARGR PMDRLVCGDV GFGKTEVALR
SAFVAALAGF QVAVVVPTTL LARQHYRTFA ARFQGLPVRV RQMSRLVSAK DMAEAKEGLA
SGQVDIVIGT HALLGKQVKF RNLGLVIVDE EQHFGVVHKE QLKKLRAEVH VLTLTATPIP
RTLQLALSGV RELSLIATPP VDRLAVRTYV SPFDPVVVRE ALLREHFRGG QSFYVVPRIA
DLAEAEEFLR QYVPEVKFVL AHGQMAAGEI EDKMTAFYDG KYDVLVSTTI VESGLDIPTA
NTLVVHRADM FGLSQLYQLR GRVGRSKARA YAYLTVPANR TLTAGADKRL RVLQSLDSLG
AGFSLASHDL DIRGAGNLLG DEQSGHIKEV GYELYQEMLE EAVASMRGGG AGADEEGHWS
PQISVGTPVL IPDGYVPDLD ARMALYRRLS DVETRSEIDG FAAELIDRFG KLPQEVEFLL
KIVEIKGLCR TANVEKIEAG PKGVVLSFRE NSFPNPAALV EVINDERGNA KLRPDHKLVF
KRDWDTPEER LAGTHRLMTT LAKLAAPAKA A
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