| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3018 |
|---|
| Symbol | |
|---|
| ID | 5456173 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 3220295 |
|---|
| End bp | 3221080 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640878606 |
|---|
| Product | exodeoxyribonuclease III Xth |
|---|
| Protein accession | YP_001414282 |
|---|
| Protein GI | 154253458 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0708] Exonuclease III |
|---|
| TIGRFAM ID | [TIGR00195] exodeoxyribonuclease III
[TIGR00633] exodeoxyribonuclease III (xth) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.176682 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 0.802869 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCG CAAGTTTCAA CGTCAACTCC ATCAAGGCCC GCCTGACCAA CCTCACCGAC
TGGCTGAAGG AGGCGGAGCC CGACATCGTC TGCCTGCAGG AACTGAAATG CATCGACGAA
AACTTTCCGC ATGGGCCTAT CGAGGAGCTT GGCTACAACG TCGCCGTCAA CGGACAGAAG
ACCTATAACG GCGTTGCCAT TCTTTCCAAG CATCCGCTCG AGGATGTGAG CCGCGGCCTG
CCGGGCAATG ACGGCGACGA CCATGCCCGC TATATCGAGG CCGTGGTGAG CGCGAATGGA
AGCGTTGTGC GCGTGGCATC GATCTATCTG CCGAACGGCA ACCCCGTGGA TACGGACAAG
TTCACCTACA AGCTGGGCTG GATGGACCGC CTGATCGATC ATGCCCGCGA ATTGCTTTCC
TATGAAGAGC CACTGGTGCT GGCGGGGGAC TACAATGTTA TTCCGACAAT CGACGATGTG
CACAACCCGG CGGCATGGGT AAACGACGCC CTTTTCCGGC CGGAAACGCG TGCGAAGTTC
CGTGAGCTGA TTAATCTGGG TCTCACCGAT GCCTTCCGCG CATGCCACCG CGAGGCGCAC
AGGTATACGT TCTGGGACTA TCAGGCGGGC GCCTGGGCGA AGGATAACGG CATCCGCATC
GACCATCTTC TCCTGTCGCC GCAGGCCGCC GACCTGCTGA AGGCAAGCGA TATAGACCGC
GCCGTGCGAG GCCGCGAAAA GCCCTCGGAC CACGTGCCGA TATGGGTGGA ACTCGACCTC
GGCTGA
|
|---|
| Protein sequence | MKIASFNVNS IKARLTNLTD WLKEAEPDIV CLQELKCIDE NFPHGPIEEL GYNVAVNGQK
TYNGVAILSK HPLEDVSRGL PGNDGDDHAR YIEAVVSANG SVVRVASIYL PNGNPVDTDK
FTYKLGWMDR LIDHARELLS YEEPLVLAGD YNVIPTIDDV HNPAAWVNDA LFRPETRAKF
RELINLGLTD AFRACHREAH RYTFWDYQAG AWAKDNGIRI DHLLLSPQAA DLLKASDIDR
AVRGREKPSD HVPIWVELDL G
|
|---|
| |