Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2993 |
Symbol | |
ID | 5456438 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 3189590 |
End bp | 3191491 |
Gene Length | 1902 bp |
Protein Length | 633 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640878579 |
Product | ATP-dependent DNA helicase RecQ |
Protein accession | YP_001414257 |
Protein GI | 154253433 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0514] Superfamily II DNA helicase |
TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family [TIGR01389] ATP-dependent DNA helicase RecQ |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.768661 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 0.830913 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGGTTC ATTCCAGGGC CACAGATGGT AGTTTCGCGG CGCGAGATGT TTCCTCTACC GAGTCGCCAA TGCCCAGCCC CATAAATACC GCGGATAAGC CGCTGCCTCA CCCGGAGGAG GTGCTGAAGT CGATATTCGG CCTTCCCTCG TTTCGCGGCG AGCAGGCCGA GATCATCCGC CATGTGGTCG ATGGCGGTGA CGCCGTGGTC CTGTTACCGA CAGGGGCCGG CAAATCATTG TGCTACCAGA TACCGGCGCT CTGTCGCGAG GGGGTGGCGG TTGTGGTGTC GCCGCTCATA GCGTTGATGC GCGATCAGGT GGAGGCGCTC CGTCAGTCCG GCGTCCGAGC GGCGGCGCTC AACTCCACAT TGACGCAGGA AGAAGCGCGC GACATTCGCG AGGCGCTGAC GGCAGGCGAA CTCGACCTTC TCTATGTAAC GCCGGAGCGG CTTGCAAGCG ACGGTTTCAT AAGCTTCCTC GCGCGCGTGC CCCTGGCGCT CTTCGCCATC GACGAAGCAC ATTGCATCAG CCAGTGGGGG CATGACTTCC GTCCAGAATA TCTGCAGTTG GGACGGCTCA AGGAGCGTTT CCCCGATGTG CCGCGCCTTG CGCTTACGGC AACGGCCGAT CCGCAAACGC GCGACGATCT GGTTCACCGC TTGCAGCTTG ATGATGCCCG GATTTTTTCA GCGAGCTTCG ACCGCCCGAA TATCCGCTAC ACGATCGTCC GCAAGGACAA CGCAAAAAGC CAGTTGCGCG ATTTTCTGAA GGCACATGAA GGCGCGAGCG GCATCGTCTA TTGCCTCAGC CGCAAGAAAG TCGAGGAAAC CGCCGATTGG CTGACTGCGC AGGGCATTCT TGCGCTGCCT TATCACGCGG GGCTCGATCG CAGCATTCGT GACAAGCATC AGGATGCCTT TCTAAAGGAT GAGGGGCCTG TACTCGTCGC CACCATCGCG TTCGGTATGG GCATCGATAA ACCCGATGTA CGCTTCGTCG CGCATCTCGA CCTGCCGTCA AGCATCGAGG CCTATTATCA GGAAACGGGC CGGGCAGGGC GCGATGGATT GCCATCGGAT GCGTGGATGG CATGGGGCAT GAGCGACGTC TCGCTCAGGC GCCGCATGAT CGACGAAGGC GCATCGCCGG AATTGGTGAA ACAGGTAGAA CGCACCAAAC TCGACGCCCT GCTTCATGTC TGCGAGACGG CCACATGCCG GCGCCAGGCG CTGCTCGCCC ATTTCGGTGA GAGCCATGCA GGCGCTTGCG GCAATTGCGA CGCATGTCTT ACGCCCGCCG AAATGTGGGA TGGAACCGAA GCGGCGCGCA AGGCTCTTTC CGCGATCTAC CGGACAGGCC AGCGTTTCGG CGCAGGGCAT CTCATCGACA TTTTGCGTGG CAACAAGACG GAGAAGGTCG AACGCAGCCA GCATGATGAT CTGCCGACTT TCGGGGTTGG AAAAGACCTC GATCAGAAGA GCTGGCAATC CGTCTTCAGG CAGCTCGCCG CGCGCGGCAT CATTTCAATC GACCACACCG CCTATGGCGC GCTGAAGCTT GAGGAAAGTG CGCGGCCGGT ATTGCAGGGT CAGCAGCCGG TTGAGCTTCG CCGCGACCCG GTCTCGAAGC GGCGGCAAAG AGCTGCTGCG GCGGCGTCGA CCGACCCCTT GGCCTACCCC GAGGAGGAAG CGCTTTTCCA GGCGCTGCGC GCGGAGCGTT TGCGGCTCGC CCGCGAGCAG GGCGTCCCGC CCTACGTGAT CTTCCACGAC ACTTCGCTTC GGGAAATGGC ACGGCGTCGG CCTGCCAGTG TCGAGGACAT GACAGACATC CCCGGCGTCG GCGGCGCCAA GATCGCCCGC TATGGCGAAG CCTTCCTCGC GGTGGTGGCG GAGGTGGCTT AG
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Protein sequence | MRVHSRATDG SFAARDVSST ESPMPSPINT ADKPLPHPEE VLKSIFGLPS FRGEQAEIIR HVVDGGDAVV LLPTGAGKSL CYQIPALCRE GVAVVVSPLI ALMRDQVEAL RQSGVRAAAL NSTLTQEEAR DIREALTAGE LDLLYVTPER LASDGFISFL ARVPLALFAI DEAHCISQWG HDFRPEYLQL GRLKERFPDV PRLALTATAD PQTRDDLVHR LQLDDARIFS ASFDRPNIRY TIVRKDNAKS QLRDFLKAHE GASGIVYCLS RKKVEETADW LTAQGILALP YHAGLDRSIR DKHQDAFLKD EGPVLVATIA FGMGIDKPDV RFVAHLDLPS SIEAYYQETG RAGRDGLPSD AWMAWGMSDV SLRRRMIDEG ASPELVKQVE RTKLDALLHV CETATCRRQA LLAHFGESHA GACGNCDACL TPAEMWDGTE AARKALSAIY RTGQRFGAGH LIDILRGNKT EKVERSQHDD LPTFGVGKDL DQKSWQSVFR QLAARGIISI DHTAYGALKL EESARPVLQG QQPVELRRDP VSKRRQRAAA AASTDPLAYP EEEALFQALR AERLRLAREQ GVPPYVIFHD TSLREMARRR PASVEDMTDI PGVGGAKIAR YGEAFLAVVA EVA
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