Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2943 |
Symbol | |
ID | 5455833 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 3139547 |
End bp | 3141541 |
Gene Length | 1995 bp |
Protein Length | 664 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640878526 |
Product | poly(R)-hydroxyalkanoic acid synthase, class I |
Protein accession | YP_001414207 |
Protein GI | 154253383 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG3243] Poly(3-hydroxyalkanoate) synthetase |
TIGRFAM ID | [TIGR01838] poly(R)-hydroxyalkanoic acid synthase, class I |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.000122765 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.00212839 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCCTGA AAGATACGTC CCCCGCAGCG CCCGCCGCCG CTCGAAAAGG CGCCTCCACC AAGCCCCGCC CCCCGAAAAA GCCCCGTGCG CCGCGCCGGA AAGCCGCCCC CCTCTCCGAA GCCCTGCCCG GGCCGGAGGC CGAGGCGCCC GCCCCCACGG AAGGCATCTC CGCCAAATTC GCGCCGGACC CGAAAGCCGC CGCCGCCCGG GATTATGTAA TGCCGGACCT CGGCGCCCTC GCGGTCAATC TTCTCAAGGC CGCCGGCATG GGCCAGAAGG CCGCCCGCCA GTTGATGCAG AGCGACGATT CGTCGGATGC CAGCCACACC CTCCACGATC TGGAGCGCGT CGGCCGCGCC CTCATGGAAG TCGCCGGCAG CTATATCCGC AATCCCGCCC GGATTTTCGA GGCGCAGGCC GCCCTCTGGG AAGGCTATAT GAGCCTTGCC GGCTCCATGA CGCGCCGCTT CCTGCTGGGC GAGGAAGTGC CCCCCGTCGC GCAGCCGGGC CGCAGCGACA AGCGTTTCCG CGATCCCGAC TGGCAGGAAA ACATCGTCTT CGACCTGATG AAGCAGTCCT ACCTGCTCAC CAGCAAATGG CTCACCGACC GCGTGAAGCA GGCCGAGGGC GTCGATCCGC ATACGCGCGA AAAGGCCGAC TTCTATGTCC GCCAGATGAC GAACGCCATG TCGCCCTCGA ACTTCCTCTT CACCAACCCG GAAATCCTCC GCGCGACGCT CGCCTCCAAC GGCGAGAACC TCGTCGCCGG CATGGAGCAT CTGCTGGAGG ATATCGAGCG CGGCCACGGC CACATCCAGA TCCAGCAGAC CGATATGTCC GCCTTCCGCC TCGGCGAGAA TATCGCGACC ACGCCGGGCA AGGTCATCTA CCAGAACGGC CTGATGCAAT TGATCCAGTA CGAGCCGACG ACGGAGAAGG TCCACAAGCG CCCGCTCGTC ATCTTCCCGC CCTGGATCAA CAAATATTAC ATCCTCGATC TCACGCCCGA GAAGTCGCTC ATCAAATGGT GTCTCGACAA GGGCTACACC GTCTTCGTCG CAAGCTGGGT GAACCCGGAT GCGCGCCTCG CGCTGAAAAC CTTCGAGGAT TACATGATCG AAGGCGTCTA CGCCGCGCTC AATGCCGTCG AGCAGGCAAC CGGCGAAACC GAGGTAAACG CGGTCGGCTA CTGCATCGGC GGCACGCTGC TCGCCTGCTC CCTCGCCCAT ATGGCGGCGC GCAAGGACAC CCGCATCAAA TCGGCGACCT TCCTCGTCAC GCAAGTGGAT TTCACGGAAG CCGGCGAGCT GAAAGTCTTC ATCGACGAGG AACAGATTTC CGACATCGAA AAGCAGATGC ACCAGAAGGG CGGCTACCTG AAGGGGTCCA CCATGGCCTC CACCTTCAAC ATGCTCCGCT CCAACGACCT CATCTGGAAC TACGTCGTCA ACAACTACCT GCTCGGCCGC GAGCCCATGC CCTTCGACAT CCTCTACTGG AACGCGGACG CAACGCGCCT GCCCTCCGCC ATGCATGTCG GCTATCTGCG CGAATGCTAC CTCGAAAACA AACTCGCCGA AGGCCGCATG ATCCTCGGCG GCGAGGAACT GCATCTCGAC AAGGTGAAAG TCCCCGTCTA CCTGCAGTCG AGCCGCGAGG ATCACATCTC GCCCTATAAC TCCGTATACA AAGCAACGAA ACTCTTCGGC GGCCCGGTGC GCTTCATCTG CGCCGGCTCC GGCCACATCG CCGGCGTCAT AAACCCGCCC GCCGCCGGCA AATACAACCA CTGGCTGAAT GACGACCTCC CCCCCACCCC CGACGAATGG TTCGCCGGCG CCACCGACCA CAAGGGCTCC TGGTGGCCCG ACTGGGAAAC CTGGCTCGCC GAAAAGTCAG GCCCCATGGT CGCCGCGCGC AAACCCGGCA GCGGCAAACT CAAGGTGCTG GAGGACGCGC CGGGGTCATA TGTGCTGGTG AAGTCGGAAG ACTGA
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Protein sequence | MSLKDTSPAA PAAARKGAST KPRPPKKPRA PRRKAAPLSE ALPGPEAEAP APTEGISAKF APDPKAAAAR DYVMPDLGAL AVNLLKAAGM GQKAARQLMQ SDDSSDASHT LHDLERVGRA LMEVAGSYIR NPARIFEAQA ALWEGYMSLA GSMTRRFLLG EEVPPVAQPG RSDKRFRDPD WQENIVFDLM KQSYLLTSKW LTDRVKQAEG VDPHTREKAD FYVRQMTNAM SPSNFLFTNP EILRATLASN GENLVAGMEH LLEDIERGHG HIQIQQTDMS AFRLGENIAT TPGKVIYQNG LMQLIQYEPT TEKVHKRPLV IFPPWINKYY ILDLTPEKSL IKWCLDKGYT VFVASWVNPD ARLALKTFED YMIEGVYAAL NAVEQATGET EVNAVGYCIG GTLLACSLAH MAARKDTRIK SATFLVTQVD FTEAGELKVF IDEEQISDIE KQMHQKGGYL KGSTMASTFN MLRSNDLIWN YVVNNYLLGR EPMPFDILYW NADATRLPSA MHVGYLRECY LENKLAEGRM ILGGEELHLD KVKVPVYLQS SREDHISPYN SVYKATKLFG GPVRFICAGS GHIAGVINPP AAGKYNHWLN DDLPPTPDEW FAGATDHKGS WWPDWETWLA EKSGPMVAAR KPGSGKLKVL EDAPGSYVLV KSED
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