Gene Plav_2909 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_2909 
Symbol 
ID5454498 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp3110537 
End bp3111025 
Gene Length489 bp 
Protein Length162 aa 
Translation table11 
GC content57% 
IMG OID640878491 
ProductATP-cone domain-containing protein 
Protein accessionYP_001414173 
Protein GI154253349 
COG category[K] Transcription 
COG ID[COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 
TIGRFAM ID[TIGR00244] transcriptional regulator NrdR 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.00000766609 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value0.00220576 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGTTGTC CATATTGCGG AAACGAAGAT ACGCAGGTGA AGGACTCACG TCCCACCGAA 
GACAATACAG CGATCCGGCG GCGGCGCTTT TGTACGGCAT GCGGCGGCAG GTTTACGACC
TTCGAGCGCG TGCAGCTCCG TGAGCTGACG ATCATCAAAA CAAACGGCCG AAGAGTGCCT
TTCGACCGGG ACAAACTCAT GCGTTCCGTG CAAATAGCCA TGCGGAAACG CCCTGTTGAG
CAAGAGCGTA TTGAGCGTAT GGTCAGCGGC ATCGTAAGGC GGCTCGAGAG CATGGGAGAG
AGTGAAATCC CGTCCGCCAT GATCGGTAAA CTGGTCATGG AAGGCCTGAG TTCTCTCGAT
GCCGTCGCCT ATGTGCGCTT CGCATCGGTC TACCGGAACT TTCGCGAAGC CAAGGATTTT
GAAGAATTTC TGGGCGAGCT CAGCGGGCCG CTTGGCAGTT CGCTCCGCGA TGAGGATGAG
GATCGCTGA
 
Protein sequence
MRCPYCGNED TQVKDSRPTE DNTAIRRRRF CTACGGRFTT FERVQLRELT IIKTNGRRVP 
FDRDKLMRSV QIAMRKRPVE QERIERMVSG IVRRLESMGE SEIPSAMIGK LVMEGLSSLD
AVAYVRFASV YRNFREAKDF EEFLGELSGP LGSSLRDEDE DR