Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2909 |
Symbol | |
ID | 5454498 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 3110537 |
End bp | 3111025 |
Gene Length | 489 bp |
Protein Length | 162 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640878491 |
Product | ATP-cone domain-containing protein |
Protein accession | YP_001414173 |
Protein GI | 154253349 |
COG category | [K] Transcription |
COG ID | [COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains |
TIGRFAM ID | [TIGR00244] transcriptional regulator NrdR |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.00000766609 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.00220576 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGCGTTGTC CATATTGCGG AAACGAAGAT ACGCAGGTGA AGGACTCACG TCCCACCGAA GACAATACAG CGATCCGGCG GCGGCGCTTT TGTACGGCAT GCGGCGGCAG GTTTACGACC TTCGAGCGCG TGCAGCTCCG TGAGCTGACG ATCATCAAAA CAAACGGCCG AAGAGTGCCT TTCGACCGGG ACAAACTCAT GCGTTCCGTG CAAATAGCCA TGCGGAAACG CCCTGTTGAG CAAGAGCGTA TTGAGCGTAT GGTCAGCGGC ATCGTAAGGC GGCTCGAGAG CATGGGAGAG AGTGAAATCC CGTCCGCCAT GATCGGTAAA CTGGTCATGG AAGGCCTGAG TTCTCTCGAT GCCGTCGCCT ATGTGCGCTT CGCATCGGTC TACCGGAACT TTCGCGAAGC CAAGGATTTT GAAGAATTTC TGGGCGAGCT CAGCGGGCCG CTTGGCAGTT CGCTCCGCGA TGAGGATGAG GATCGCTGA
|
Protein sequence | MRCPYCGNED TQVKDSRPTE DNTAIRRRRF CTACGGRFTT FERVQLRELT IIKTNGRRVP FDRDKLMRSV QIAMRKRPVE QERIERMVSG IVRRLESMGE SEIPSAMIGK LVMEGLSSLD AVAYVRFASV YRNFREAKDF EEFLGELSGP LGSSLRDEDE DR
|
| |