Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2908 |
Symbol | glyA |
ID | 5454492 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 3109174 |
End bp | 3110490 |
Gene Length | 1317 bp |
Protein Length | 438 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640878490 |
Product | serine hydroxymethyltransferase |
Protein accession | YP_001414172 |
Protein GI | 154253348 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0112] Glycine/serine hydroxymethyltransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0000280655 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 0.00545149 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCTTTGA GCGATGCCGT GTCCCAGCGG AGCAGTTTTA CCGGGTTTTT TACCGATGGA TTGGCGGCAA GCGATCCTGA CGTCCTGAGG GCCATCGAGC TGGAACTCGA GCGCCAGCAG ACCGAGATTG AGTTGATCGC CTCGGAAAAC ATCGTCTCCC GCGCCGTTCT CGAGGCGCAG GGATCGATCA TGACCAACAA ATATGCGGAA GGGTATCCCG GCAAGCGCTA CTACGGCGGC TGCGAGTTTG TCGATATAGC CGAAGAGCTG GCAATTGATC GCGCCAAAAA ACTGTTCGAT TGCACCTATG CCAATGTGCA GCCCAATTCC GGTTCGCAAG CCAACCAGGG CGTGATGATG GCGTTGCTGA AGCCGGGCGA CACCATTATG GGCATGAGCC TTGCGGCCGG CGGTCACCTG ACGCATGGCG CGGCACCCAA CCAGTCCGGA AAATGGTTCA ATGCCGTTCA ATATGGCGTT CGCAGCCAGG ACCACCTGAT CGATATGGAT GAGGTGGCCA GCCTGGCGAA GCAGCACAAG CCGAAGATGA TCATCGCGGG CGGCTCGGCT TATCCACGTG TCATCGATTT CAAGGCATTT CGCGAAATCG CCGACAGTGT TGGCGCGCTC TTCATGGTGG ACATGGCGCA TTTTGCCGGC CTCGTCGCGG GCGGCATGCA TCCGAGCCCG CTTCCTTATG CAGACGTCGT TACGACGACG ACTCACAAGA CGCTGCGCGG GCCGCGGGGC GGCATGATCC TCTCGAACAA CGAGGACATC GGCAAGAAGG TCAACTCGGC GATCTTCCCC GGCATTCAAG GCGGACCGCT GATGCATGTC ATCGCGGGCA AGGCCGTTGC CTTTGGCGAG GCACTCCGGC CAGAGTTCAA GGCCTATGCA AAATCGGTCG TGGACAACGC GCGGACGCTT GCGGCGACAC TTGCCGAGGC TGGACTTGCG ATCGTTTCAG GCGGCACGGA TACGCATCTG ATGCTTGTCG ATCTCAGACC CAAGAAGCTG ACAGGCAAGA CGGCGGAAGC CGCACTCGAG CGCGCACACA TAACCTGCAA CAAGAATGGT ATTCCATTCG ATCCGGAGAA GCCGACGATC ACTTCCGGCG TTCGCCTTGG CACGCCGGCG GGAACGACGC GCGGCTTCGG TGTAGCGGAA TTTGCCGAGA TCGGGCGACT GATTACGGAA GTTCTGGACG GACTGGCGCA GAACGGCGAT GACAAGAACG GCGATGTCGA GGCGAGTGTG CGCTCTCGCG TCATCGAGTT GTGCAGGCGT TTTCCGATTT ATGGCGGGCC GAAGTAA
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Protein sequence | MALSDAVSQR SSFTGFFTDG LAASDPDVLR AIELELERQQ TEIELIASEN IVSRAVLEAQ GSIMTNKYAE GYPGKRYYGG CEFVDIAEEL AIDRAKKLFD CTYANVQPNS GSQANQGVMM ALLKPGDTIM GMSLAAGGHL THGAAPNQSG KWFNAVQYGV RSQDHLIDMD EVASLAKQHK PKMIIAGGSA YPRVIDFKAF REIADSVGAL FMVDMAHFAG LVAGGMHPSP LPYADVVTTT THKTLRGPRG GMILSNNEDI GKKVNSAIFP GIQGGPLMHV IAGKAVAFGE ALRPEFKAYA KSVVDNARTL AATLAEAGLA IVSGGTDTHL MLVDLRPKKL TGKTAEAALE RAHITCNKNG IPFDPEKPTI TSGVRLGTPA GTTRGFGVAE FAEIGRLITE VLDGLAQNGD DKNGDVEASV RSRVIELCRR FPIYGGPK
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