| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2904 |
|---|
| Symbol | |
|---|
| ID | 5454018 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3105766 |
|---|
| End bp | 3106542 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640878486 |
|---|
| Product | glycerophosphoryl diester phosphodiesterase |
|---|
| Protein accession | YP_001414168 |
|---|
| Protein GI | 154253344 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0584] Glycerophosphoryl diester phosphodiesterase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.000060141 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCGACCGG CGAAATTTCC TTATCTCGAG CATGACGGGT TGCTTGCTTT CGCGCATCGG
GGGGGCGCAG GAGCATGGCC GGAAAATACG ATGCCGGCCT TTCAAGGAGC GATCGATCTC
GGCTACCGGT ATGTCGAAAC CGACGTGCAT GCGACACGCG ACGGCGTGCT GCTTGCCTTT
CATGATGACC GGCTGGATCG CGTGACCGAC AGCACCGGCT GCATTGCGGA CATGGATTAC
GACCAGGTGC GCAAGGCACG TGTGGACGGG AAGGAGCCGA TACCGCTGCT GGCGGAACTT
CTGAGCACCT GGCCCGAGAT CAAGATCAAC ATCGATCCGA AGCGCGACAA TGCGGCGGAA
CCGCTGATCA AGCTGCTGAA GGATATGGAT GTCATCGATC GGGTTTGCGT TACCGCCTTC
TCTGGCAAAC GCACTGCCGC GATCCGCGAT GCCATTGGGC CGAGGCTCTG TACGGGCATG
GGGCCGCTTT CGACCGTAAG GCTGCGTTTG GGCAGCTGGG CGGGGGCGGC CGGGGCGCTG
CTCGGAGGAT TTGTGGAGGG CGTTGCACAA ATTCCCATCG AGCAATATGG CGTTACGCTG
GTGGACCGGG CGCTGGTGGA CAGGGCCCAT GAGCTCGGGC TCCAGGTGCA TGTCTGGACC
ATCGACGATG AGGCAGAAAT GCGCCGCTTG ATCGATCTCG GCGTCGACGG GCTCATGACC
GATGTGCCGG CGCTCCTGAA AACGGTTCTC ATTGAAAAAG GGCTCTGGCC CTCGTAA
|
|---|
| Protein sequence | MRPAKFPYLE HDGLLAFAHR GGAGAWPENT MPAFQGAIDL GYRYVETDVH ATRDGVLLAF
HDDRLDRVTD STGCIADMDY DQVRKARVDG KEPIPLLAEL LSTWPEIKIN IDPKRDNAAE
PLIKLLKDMD VIDRVCVTAF SGKRTAAIRD AIGPRLCTGM GPLSTVRLRL GSWAGAAGAL
LGGFVEGVAQ IPIEQYGVTL VDRALVDRAH ELGLQVHVWT IDDEAEMRRL IDLGVDGLMT
DVPALLKTVL IEKGLWPS
|
|---|
| |