| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2852 |
|---|
| Symbol | |
|---|
| ID | 5454409 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 3055291 |
|---|
| End bp | 3056184 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640878434 |
|---|
| Product | alpha/beta hydrolase fold |
|---|
| Protein accession | YP_001414116 |
|---|
| Protein GI | 154253292 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2267] Lysophospholipase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.142259 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 0.522222 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGACGC GGCGGCCAGT TTCGTTCAAA TCCGGGAAGT GGACGCTCAA GGGATACCTG
CATGAGCCGG CAGGGGCACC GCCATTTGCC TGCCTCGTCA TGTGCCATGG CTTCAGCGGG
ACGATGGATC GGCTGCAGGA CCATGCAGCG GCTTTCAGCG AGGCGGGTTT CGCGGTGCTC
ACTTTCGACT ACCGGAATTT CGGCGAGAGC GGCGGGAAGC CCAGGCAGGT GATTTCGATC
GAGCGGCAGC TCAACGACAT CGCAGCGGCC ATTGCTTTCG TCAGGGCACA GAGCAATATC
GACAGCGGGA AAGTTGTGCT GTGGGGCTCG TCGCTTGGCG GCGGGCATGT GGTTGTCGCT
GCCGCGCGTG ACAAACGCGT AGCAGCGGTG ATTTCCCAAG TACCCTTTAA CGGTTTTCCG
AAGAAGGTGG AGGGAATGAC CGCCGGGCGC CGAAGGCAGA TCGTTGGAGC CATGCTGAAA
GACTGGTTGC GCGGCAAGCT GGGGCTTTCA CCGGTCTACA TGGCCGCTGT GGGCCATAAA
GGAGAATTTG CGGTTATGGC GTCAGACGAT GCGGCCGCTG CCGTCGAAGC GATGAGCGGA
GGAGGCGCTA CGACCTGGCA AAATAAGGTG GCGCCGCGCA TTCTGCTGGA AATGGTCTTC
TACAAGCCGG GAAATTTTGC GCCGTTTGTA TCTGCACCGC TGCTGGTTTG CATGGCGGAA
GGCGACAAGG AGACGCCGCC GGAAACCGTG CGCGAGCTTG CGGAAAAGGC GCCGCGTGGC
GAGCTTCGCC GCTATCCCAT CCGCCACTTC GAAATATACA GAGAGGATAT TCGAGACATG
GTGCTGCGGG ATCAGATCGC CTTTCTCAAG ACGCATCTTT TTGTCGCTGG ATAG
|
|---|
| Protein sequence | MGTRRPVSFK SGKWTLKGYL HEPAGAPPFA CLVMCHGFSG TMDRLQDHAA AFSEAGFAVL
TFDYRNFGES GGKPRQVISI ERQLNDIAAA IAFVRAQSNI DSGKVVLWGS SLGGGHVVVA
AARDKRVAAV ISQVPFNGFP KKVEGMTAGR RRQIVGAMLK DWLRGKLGLS PVYMAAVGHK
GEFAVMASDD AAAAVEAMSG GGATTWQNKV APRILLEMVF YKPGNFAPFV SAPLLVCMAE
GDKETPPETV RELAEKAPRG ELRRYPIRHF EIYREDIRDM VLRDQIAFLK THLFVAG
|
|---|
| |