Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2831 |
Symbol | |
ID | 5454642 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 3034158 |
End bp | 3036842 |
Gene Length | 2685 bp |
Protein Length | 894 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640878412 |
Product | DNA topoisomerase I |
Protein accession | YP_001414095 |
Protein GI | 154253271 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA |
TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 49 |
Fosmid unclonability p-value | 0.442826 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACGTCG TTATTGTCGA GTCGCCGGCC AAGGCGAAAA CCATCAACAA ATATCTCGGC AAGGGCTTCA AGGTCCTGGC CTCCTACGGC CATGTCCGTG ACCTGCCCTC GAAGGATGGC TCCGTCCTCC CCGATCAGGA CTTCGCCATG GCCTGGGATG TCGATGCCAA GTCCCAGAAG CGGCTGAACG AAATCGCCAC CGCCGTAAAG GGCGCCGATC GTCTGATCCT CGCAACCGAC CCGGATCGCG AAGGCGAGGC CATTTCCTGG CATGTGCTCG AGGTCCTGAA TAAAAAGAAG GTGCTGAAGG ACGTCGAGGT CCAGCGCGTC GTCTTCAACG CCATCACCAA GAAATCCGTC ACCGAGGCGA TGGAGCATCC GCGCGGCCTC GACAAGGAAC TGATCGACGC CTATCTCGCG CGCCGCGCCC TCGACTACCT CGTCGGCTTC ACCCTTTCGC CCGTTCTCTG GCGCAAGCTT CCGGGCTCGC GCTCGGCAGG CCGTGTGCAG TCCGTCGCGC TCCGCCTCAT CTGCGACCGC GAACTCGAAA TCGAAGCCTT CCGCAGCCAG GAATACTGGA CCGTCGAAGC AGACATGAAG ACTGGCGGCG GTTCTCCTTT CGTCGCCCGC CTCACCGTGC TCGACGGCAA GAAGCTCGAC AAGTTCGACA TCCCGGACAA GAAATCCGCC GACGACATCG AAGCGCGCAT CAAGGCCTCG CGCTTCTCCG TTAAGTCGGT CGAGAGCAAG CCGACGCGGC GCAATCCGAA TCCGCCCTTC ACCACCTCCA CCATCCAGCA GGAAGCCTCG CGCAAGCTCG GCTTCTCGGC GAGCCGCACC ATGCAGGTCG CCCAGCGCCT CTATGAGGGC GTGGAGATCG ACGGCGAAAC GACAGGCCTC ATCACCTATA TGCGAACCGA CGGCGTGCAG ATCGCCCCTG AGGCCATCGC GCAGGCACGC ACCGTCATCA ACAACGAGTT CGGCGAGGCC TATCTGCCGG ATGCGCCCCG CGTCTACACC ACCAAGGCGA AGAACGCGCA GGAAGCGCAT GAGGCGATCC GTCCGACCGA TCTCTCGCGT TTGCCGAAAC ATGCCGCGAA ATATCTCGAC GACGACCAGC GCCGCCTCTA CGAACTCGTC TGGAACCGCA CCATCGCCAG CCAGATGGAA AGCGTGCAGC TTGAGCGCAC CACCATCGAG ATCGAGGCGG ACGACGCGCC CATCGGCCTT CGCGCCACCG GTTCCGTCAT CGTCTTCGAC GGTTTCCTGC GCCTCTACCA GGAAGGCCGC GACGAGCCGG ATGATGGCGA GGATGGCGGC CGCCTGCCGA AGGTCGCCCG CGGCGACAAG CTCGGCCTCG AGAAGGTCCG TCCCGAACAG CATTTCACGG AGCCGCCGCC CCGCTTCACC GAGGCGAGCA TCGTCAAGCG GATGGAAGAA CTCGGCATCG GCCGTCCTTC TACCTACGCC TCGACTCTGC AAACGCTGCG CGACCGCGAC TATGTCCACA TGGACAAGAA CCGCCTCGTG CCGCAGGACA AGGGCCGCCT CGTCACCGCC TTCCTCGAAA ACTTCTTCAC CCGCTATGTC GAATACGACT TCACGGCGGA ACTGGAAGAA AAGCTCGACA AGGTGTCGGC CGGCGAGCTC GACTGGAAAG ACCTGCTGCG CGAATTCTGG AAGGAATTCA CGGTCAACGT CGCCGAGGCG CTGGAGCTGC GCATCACCGA GGTGCTCGAC CGTCTCAATG AGGTTCTTGG CCCGCACGTC TTCCCCGAAA AGGAAGACGG TTCCAACCCG CGTGCCTGCC CGTCATGCGG CAACGGCATC CTCTCGCTCA AGGTCGGCCG CTTCGGCGCC TTTGTCGGCT GCTCGAATTA TCCGGACTGC AAATTCACGC GCCAGCTCAC TGTCGGCGCC GAAGGCGAAG AACAGGCGGG CGACCGCGTT CTCGGCACCG ATCCCGAGAC CGGCGCCGAA GTCTCGCTGA AGACCGGCCG CTTCGGTCCC TATGTCGAGC GCGCGCCGCT CGGCGACGAT GAAAAGCCGA AGCGCAGCGG CCTGCCCGCG AAAATGTCCG CCGCAGATGT CGATCTCGAC ACCGCGCTGC GCCTGCTGAC GCTGCCGCGG GAAATCGGCA TCCATCCCGA AACCGGCAAG AAGATCACCG CCGGCCTCGG CCGCTTCGGT CCCTTCGTGC TGCATGACGG CACCTATGCG AACCTGAAAG ACCCGGAAGA GCTTTTCGAC ATCGGGCTCA ATCGCGCCAT AGCCGTCCTC GCCGAAAAAG TCATCCGCGC CGAGGAGCGC GCCGGCAAGG TGCTGAAGGA ACTGGGCGAC CATCCCGACA CCGGCAAGCC CGTGCAGGTC CGCGAAGGCA AATACGGCCC CTACATCAAG CACGGCACCA CCAACGCGAC GCTGCCGAAA TCCGCCGATC CTGCCGCCGT GACGCTGGAA GAGGCCCTCG CTCTCGTCGC CGAAAAAGAT GCGAAGAGCG GCAAGAAGAA ACCTGCCGCA AAGAAGGCGG CGAAAAAGCC TGCCGCCGAA AAGAAACCGG CAGCAAAGAA AGCGCCCGCG AAAAAGCCCG AAAAAAAGAA AGCACCTGCG AAGAAGAAAG CGCCTGCGAA AAAACCCGCG GCGAAAGCAA GGAAGACCGA CAAAGCCTCC GAACTGGCGG ATTGA
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Protein sequence | MDVVIVESPA KAKTINKYLG KGFKVLASYG HVRDLPSKDG SVLPDQDFAM AWDVDAKSQK RLNEIATAVK GADRLILATD PDREGEAISW HVLEVLNKKK VLKDVEVQRV VFNAITKKSV TEAMEHPRGL DKELIDAYLA RRALDYLVGF TLSPVLWRKL PGSRSAGRVQ SVALRLICDR ELEIEAFRSQ EYWTVEADMK TGGGSPFVAR LTVLDGKKLD KFDIPDKKSA DDIEARIKAS RFSVKSVESK PTRRNPNPPF TTSTIQQEAS RKLGFSASRT MQVAQRLYEG VEIDGETTGL ITYMRTDGVQ IAPEAIAQAR TVINNEFGEA YLPDAPRVYT TKAKNAQEAH EAIRPTDLSR LPKHAAKYLD DDQRRLYELV WNRTIASQME SVQLERTTIE IEADDAPIGL RATGSVIVFD GFLRLYQEGR DEPDDGEDGG RLPKVARGDK LGLEKVRPEQ HFTEPPPRFT EASIVKRMEE LGIGRPSTYA STLQTLRDRD YVHMDKNRLV PQDKGRLVTA FLENFFTRYV EYDFTAELEE KLDKVSAGEL DWKDLLREFW KEFTVNVAEA LELRITEVLD RLNEVLGPHV FPEKEDGSNP RACPSCGNGI LSLKVGRFGA FVGCSNYPDC KFTRQLTVGA EGEEQAGDRV LGTDPETGAE VSLKTGRFGP YVERAPLGDD EKPKRSGLPA KMSAADVDLD TALRLLTLPR EIGIHPETGK KITAGLGRFG PFVLHDGTYA NLKDPEELFD IGLNRAIAVL AEKVIRAEER AGKVLKELGD HPDTGKPVQV REGKYGPYIK HGTTNATLPK SADPAAVTLE EALALVAEKD AKSGKKKPAA KKAAKKPAAE KKPAAKKAPA KKPEKKKAPA KKKAPAKKPA AKARKTDKAS ELAD
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