Gene Plav_2815 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_2815 
Symbol 
ID5453911 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp3018603 
End bp3019976 
Gene Length1374 bp 
Protein Length457 aa 
Translation table11 
GC content65% 
IMG OID640878397 
Productresponse regulator receiver modulated diguanylate cyclase 
Protein accessionYP_001414080 
Protein GI154253256 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.631579 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value0.0857187 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACTGCGC GCGTACTTAT CGTCGACGAC GTTCCGGCCA ATCTGAAGCT GCTCGACGCG 
AAACTCACCG CCGAGTATTT CGACGTGTTC AAGGCCGCGT CGGGGCCGGA GGCGCTGGAG
GCGGCGAAGG AACAGCAGCC GGACATCATT CTTCTCGATG TGATGATGCC GGGCATGGAC
GGGTTCGAGG TCTGTCGCCG GCTGAAGGCG ATGCCGGAGA CGGAACATAT TCCCGTCGTG
ATGGTGACGG CGCTCGACCA GCCGAAAGAC CGGGTGCAGG GGCTGGAAGC CGGCGCCGAC
GATTTTCTTA CAAAGCCGCT CAACGATCTG GCGCTGTTCG CGCGCGTCCG CAGCCTTGTC
CGCCTGAAAA TGGTGACAGA CGAGCTGCGC ATGCGCGAGG CGACGGGGCA GCGCATCGGC
GCGCTGGGCG CGGGGACGAC TGGCGATTTC CTGATGACGG AGCCGGGGCG CATTCTTGCG
ATCGACGACC GGCCGACATC GCTGAAGCGC ATTACCGAGA CGCTGGCGAG CGAACACAAT
GTGACGGTTG CCGAGACGCA GGAAGAGCTG CTGCAGCTCG CCAATAGCGG CAATTTCGAT
CTTCATATCG TGAGCCTGAC GCTGCAGGAA TTCGACGGGC TGCGGCTCTG CTCGCAGCTG
CGCTCGCTGG AAGCGACGCG GCAGACGCCC ATTCTCGCGA TCGTGGAAGA GGGCGATACG
GGGCGCCTGG TGCGCGCGCT CGACATGGGT GTGAACGATT ATCTGGTGCG GCCGGTGGAG
CGCAACGAAC TCGTCGCGCG GGCGCGCAGC CAGCTTCGCC GCAAACGCTA TCAGGATTAT
CTGCGCGACA AGTTCCAGCA GGGGCTCGAA CTCGCGATCA CCGACGGGCT GACCGGGCTC
TATAACCGGC GCTACATGGA AGGCCATCTC GCGACGCTGG TCGACGATGC GGCGAATACC
GGCAAGCCCG TGGCGCTGCT GATTTTCGAC ATCGATTACT TCAAGGCCGT GAACGATACG
CATGGCCACC AGGCGGGCGA CGAGGTGCTG AAGGAATTCG CGGACCGCAT TTCGGCCAAT
GTGCGCGGCA TCGACCTTGC CTGCCGGCTG GGCGGCGAGG AATTCGTCGT GGTGATGCCG
GATACGGACC TCACTTATGC GATGACGGTG GCCGAACGCC TGCGTCAGGG CGTGGCGCTC
CGGCCGTTCA AGCTCGACGA GACGGGGCGG ACGCTCGATG TGACGGTGAG CATCGGTATC
GCGGTGACGG AAGGGCCGAA CGACACGGCG GCGAAGCTGC TCGGCCGCGC CGACCAGGGG
CTCTATCGCG CCAAACGCGA CGGGCGAAAC CGCGTGGTCG CCGAGGCGGC CTGA
 
Protein sequence
MTARVLIVDD VPANLKLLDA KLTAEYFDVF KAASGPEALE AAKEQQPDII LLDVMMPGMD 
GFEVCRRLKA MPETEHIPVV MVTALDQPKD RVQGLEAGAD DFLTKPLNDL ALFARVRSLV
RLKMVTDELR MREATGQRIG ALGAGTTGDF LMTEPGRILA IDDRPTSLKR ITETLASEHN
VTVAETQEEL LQLANSGNFD LHIVSLTLQE FDGLRLCSQL RSLEATRQTP ILAIVEEGDT
GRLVRALDMG VNDYLVRPVE RNELVARARS QLRRKRYQDY LRDKFQQGLE LAITDGLTGL
YNRRYMEGHL ATLVDDAANT GKPVALLIFD IDYFKAVNDT HGHQAGDEVL KEFADRISAN
VRGIDLACRL GGEEFVVVMP DTDLTYAMTV AERLRQGVAL RPFKLDETGR TLDVTVSIGI
AVTEGPNDTA AKLLGRADQG LYRAKRDGRN RVVAEAA