Gene Plav_2788 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_2788 
Symbol 
ID5456198 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp2989066 
End bp2991087 
Gene Length2022 bp 
Protein Length673 aa 
Translation table11 
GC content63% 
IMG OID640878370 
Productcarbamoyl-phosphate synthase L chain ATP-binding 
Protein accessionYP_001414053 
Protein GI154253229 
COG category[I] Lipid transport and metabolism 
COG ID[COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit 
TIGRFAM ID[TIGR00514] acetyl-CoA carboxylase, biotin carboxylase subunit 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.683073 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value0.298513 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCAAAT CCCTCCTGAT CGCCAATCGC GGCGAAATTG CCGTTCGTAT CATCCGCACC 
GCACGGCGCA TGGGCCTCAA GACCATCGCC GTCTATTCGG ATGCCGATGC CAATGCCTAT
CATGTGGCGG AGGCCGACGA GGCCTATCGG ATCGGACCGG CGCCTGCTGC GGAGAGCTAT
CTGCGTATCG ACGCCATTCT CGATGCCTGC GCGCGCTCCA GCGCGGAAGC GGTGCATCCG
GGCTATGGTT TTCTCTCCGA GAATGCGGGT TTTGCCGAAG CCTGCGAGAA GGCGGGGCTG
ATATTTGTAG GGCCGCCTGC CAGCGCGATC CGCGCGATGG GATTGAAGGA CGCCGCCAAG
GCGTTGATGG AAAAGGCCGA TGTGCCCATT GTCCCCGGTT ATCACGGGGA TAACCAGGAC
GCGGATTTCC TCGGCGAGCA GGCGGAGAAG ATCGGCTATC CCGTTCTCAT CAAAGCCGTA
GCCGGCGGTG GTGGCAAGGG GATGCGCCGC GTCGACGATC CGGCCTCCTT TGCCAAAGAA
CTCAAGAGCG CGCAGCGGGA AGCCGGTTCT GCCTTCGGCG ACGAGCGCGT GCTGGTCGAG
AAATATGTAG CCCGTCCGCG TCATATCGAA ATTCAGGTCT TTGCCGACAG CCACGGGCAG
GCGGTATCGC TCCATGAGCG GGACTGCTCG TTGCAGCGGC GGCACCAGAA GGTGATCGAG
GAAGCGCCGG CCCCCGGCAT GCCGCCCGAA ATGCGCAAGG CGATGGGCGA AGCGGCGGTC
GCTGCCGCGA AGGCCATTGG CTATCGCGGC GCGGGAACGG TGGAATTCAT CGCCGATGCT
TCGGATGGGC TGAAGCCCGA CGGCTTCTGG TTCATGGAGA TGAACACGCG GCTGCAGGTC
GAACATCCCG TGACGGAAGC GATCACGGGG CTCGACCTCG TGGAATGGCA GCTCCGCGTC
GCAGGCGGCG AGCATCTGCC GCTGACGCAA GACAAGATAC CGCTGAAGGG ACATGCGGTG
GAGGTGCGTC TCTACGCGGA AGACCCGGCG AAGAAATTCT TCCCATCCAC GGGCCGGCTG
CTGCGGCTTC GCGCGCCGGA GAACATGCCG CATGTCCGCA CGGATATGGG CGTGCGCGAG
GGCGATGAAG TCAGCATGTT CTACGACCCG ATGATCGGCA AGATCATCGC GCATGGCGAG
ACGCGGCGGA TTGCGCTCAG AACGCTCCGG GGATTTCTTT CGCGCATGGA AGTGGCGGGG
CCGAAGACCA ACCTCGCGTT TCTCGCGGCC GCGATGGCGC ATGAATCCTT CATTGCCGGT
GATATCGACA CGGGTTTCAT CGACAGGCAT CTGGACCAGT TGGTGCCGAA AGGTCCGGTG
GAGCCGTGTG TGCTTGCGGT GGGGGCGGCG GCACATCTCA TCGGGCGAAG TGCTGTCTTG
CGTGCCGCGC AGGCCGGAAG CGACGAGCCG CATTCTCCGT GGGCCGAAGC GGACGGTTGG
GTGCTGGGGG GGCACCGTGC CGAAACGCTG CGATTCATCG TGGGCGGCGA AAATGTGTCG
CTGACTGTTG CTCCGGAAGG AAATGGCTGG CGGCTCTCGG GCGAAATGGT CGGTGCGAAT
ATCGCCGTCA GCGCCATAAT GGACGGGGAT GGAACCATCA GCGCCACGGT CGACGGCGTC
AGGCTGAAGG CTGCCTGTGT GCCGAGCGGG CGCGGATTTA TTCTTGTCCA TGAAGGGATA
TCGACCGATT TTTCGATAGT GGATCCGCTC GATGTCGATA TCGTATCGGA CGCGGATACA
GGCTCGCTGA AGTCGCCGAT GCCGGGCAAA ATCGTGCAGG TATTGGTGGA GCCGGGCGCC
AGAATCCGCA AAGGTGCCGC GCTCGTCGTG ATGGAAGCCA TGAAAATGGA ACAGACGCTG
ACGGCGGCGG TCGACTCGGT CGTGGCGGCC GTCCATGTCG GCATTGGCGA TCAGGTCGAA
GCGGGTGCAA CGCTTGTCGC TTTCGAGGAG AAGCCGGGGT GA
 
Protein sequence
MFKSLLIANR GEIAVRIIRT ARRMGLKTIA VYSDADANAY HVAEADEAYR IGPAPAAESY 
LRIDAILDAC ARSSAEAVHP GYGFLSENAG FAEACEKAGL IFVGPPASAI RAMGLKDAAK
ALMEKADVPI VPGYHGDNQD ADFLGEQAEK IGYPVLIKAV AGGGGKGMRR VDDPASFAKE
LKSAQREAGS AFGDERVLVE KYVARPRHIE IQVFADSHGQ AVSLHERDCS LQRRHQKVIE
EAPAPGMPPE MRKAMGEAAV AAAKAIGYRG AGTVEFIADA SDGLKPDGFW FMEMNTRLQV
EHPVTEAITG LDLVEWQLRV AGGEHLPLTQ DKIPLKGHAV EVRLYAEDPA KKFFPSTGRL
LRLRAPENMP HVRTDMGVRE GDEVSMFYDP MIGKIIAHGE TRRIALRTLR GFLSRMEVAG
PKTNLAFLAA AMAHESFIAG DIDTGFIDRH LDQLVPKGPV EPCVLAVGAA AHLIGRSAVL
RAAQAGSDEP HSPWAEADGW VLGGHRAETL RFIVGGENVS LTVAPEGNGW RLSGEMVGAN
IAVSAIMDGD GTISATVDGV RLKAACVPSG RGFILVHEGI STDFSIVDPL DVDIVSDADT
GSLKSPMPGK IVQVLVEPGA RIRKGAALVV MEAMKMEQTL TAAVDSVVAA VHVGIGDQVE
AGATLVAFEE KPG