| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2767 |
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| Symbol | |
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| ID | 5453864 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2965368 |
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| End bp | 2966360 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640878348 |
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| Product | RluA family pseudouridine synthase |
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| Protein accession | YP_001414032 |
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| Protein GI | 154253208 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 0.901259 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCAGG TATCTCAACT AGACGTTACG GAAGAAGAAG ACGGCGTTCG TCTCGACCGC
TGGTTCAAGC GGCGTTTCCC CATGCTCACG CATGGCCGCC TCGAAAAGCT GCTGCGGACA
GGGCAGGTGC GGGTCGACGG CGCGCGGGCA AAGGCCAATG CGCGCCTCGC CACGGGCCAG
GTCGTGCGCG TACCGCCGCT CGGCGAGGAT GCGGACAAGC AGGCGCCGAA GGCGGTCCAT
GCCCCGAGCG TCGACGATGC GGAGATGCTG CGTGCGAACG TCATCTACAA GGATAAATCC
GTCCTTGTAC TGAACAAACC TGTCGGCCTC GCCGTGCAGG GCGGCACCAA GACGGAGCGG
CATCTAGATG GAATGCTCGA TGCGCTCATC TTCGACGCAA AGGAGCGGCC GCGCCTCGTT
CACCGTCTCG ACCGCGACAC ATCCGGCGTC CTCGTGCTCG CCCGTACCGC CAAGGCGGCA
GCGGCGCTCG CGCAGGCGTT CAAGCAGAAG GACGCGCAGA AGATCTACTG GGCGCTTGTT
GTCGGCGTGC CGGTGCCGCG TCAAGGCACC ATCGACCTCG CGCTGTCGAA GCAGGGCGGT
CCGCGCGCCG AGCGCGTCTT TGCGGCAAAG CGCGGTGACG AGGGCGCGCG CGATGCCGTC
ACCCATTTTT CTACCGTCTC CACCGCCGCG CATACGCTCG CCTGGGTCGC CTTCATGCCG
CTCACCGGCC GCACGCACCA GATCCGCGCC CACGCCGCCG CCATCGAAAC GCCCATCGTC
GGCGACGGCA AATATGGCGG CGTCAACGCG CATCCGGGCG GCGAGATCCC GCGCAAGCTT
CACCTTCACG CGCGCTCCAT CGACATCGCC CATCCCGATG GCGGGCGCCT GCACGTTGAA
GCCGACCTGC CGCCGCACAT GAAGACAAGC TGGAAACTGC TCGGCTTCGA TGAGCGCGAC
GCGAAAGATG CCTTTGCGGG GTTGGAGGCG TAA
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| Protein sequence | MNQVSQLDVT EEEDGVRLDR WFKRRFPMLT HGRLEKLLRT GQVRVDGARA KANARLATGQ
VVRVPPLGED ADKQAPKAVH APSVDDAEML RANVIYKDKS VLVLNKPVGL AVQGGTKTER
HLDGMLDALI FDAKERPRLV HRLDRDTSGV LVLARTAKAA AALAQAFKQK DAQKIYWALV
VGVPVPRQGT IDLALSKQGG PRAERVFAAK RGDEGARDAV THFSTVSTAA HTLAWVAFMP
LTGRTHQIRA HAAAIETPIV GDGKYGGVNA HPGGEIPRKL HLHARSIDIA HPDGGRLHVE
ADLPPHMKTS WKLLGFDERD AKDAFAGLEA
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