| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2619 |
|---|
| Symbol | |
|---|
| ID | 5456266 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 2825107 |
|---|
| End bp | 2825970 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640878196 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001413884 |
|---|
| Protein GI | 154253060 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.38962 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 0.0399907 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGACGTC TCGACGGCAA GGTCGCCATC ATCACCGGCG GCACAAGCGG CATTGGCCGC
GGCACGGTCG ATCTCTTCCT GAAGGAAGGC GCGAAAGTCG TCGCCGCCGA CTTGCAGGAT
CACAAGGGCG AGGCGATGGA GCGCGAACTG GGAGAGAACT TCTCCTATTG CCGCGCCAAT
GTCGCCCATG AAGACGAAGT GAAAAACCTC GTCGATCACA CGGTGAAGAA ATTCGGCAAG
CTCGACATCC TCTTCAACAA TGCCGGCTAT GGCGGCGTCG GCGGCGAGCT TCAGGAAATC
GACATGAACG GTTTCGATGA AACCGTCGGC GTCCTGCTGA AAGGTGTCGT GCTCGGCTAC
AAATATGCCG TGCCGCACAT GAAGGCGCAG AAATCCGGCT CCATCATCTC AACGGCTTCC
GTCGCCGGGT TGCAGGCAGG CTACGGTCCC TTGGTCTACT CCGCCTGCAA GGCCGCCGTG
CATCACTTCT CGCGCTGCGC CGCCCTCGAA CTCGCGCCAC ATTTCGTGCG CTCGAACGCG
ATCTGCCCCG GCGGCATCGC CACCTCGATC TTCGGCTCGG GCCTCGGTCT CGGCACGCAG
GTGGCCGACC AGTTCGCCGA AGTCATGAAA ACGCATCTCG CGAAAATCCA GCCGACGCCC
CGCTCCGGCC TGCCGGAAGA CATCGCGAAC GCCGCGCTCT TCCTCGCCAG CGACGAATCC
ACCTTCGTCA ACGGCCAGAC CATCGCCGTC GACGGCGCGC TGACGGCGGG CCCCATGGCC
ACGCTCGGCA AGCGCATCGA CTTCGAAAAG GTGATCGGCG ATTTCCTGTC GAGCCTGCCG
GAAGACCAGC GCAAACCGGC CTGA
|
|---|
| Protein sequence | MGRLDGKVAI ITGGTSGIGR GTVDLFLKEG AKVVAADLQD HKGEAMEREL GENFSYCRAN
VAHEDEVKNL VDHTVKKFGK LDILFNNAGY GGVGGELQEI DMNGFDETVG VLLKGVVLGY
KYAVPHMKAQ KSGSIISTAS VAGLQAGYGP LVYSACKAAV HHFSRCAALE LAPHFVRSNA
ICPGGIATSI FGSGLGLGTQ VADQFAEVMK THLAKIQPTP RSGLPEDIAN AALFLASDES
TFVNGQTIAV DGALTAGPMA TLGKRIDFEK VIGDFLSSLP EDQRKPA
|
|---|
| |