Gene Plav_2503 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_2503 
Symbol 
ID5455558 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp2704170 
End bp2705363 
Gene Length1194 bp 
Protein Length397 aa 
Translation table11 
GC content66% 
IMG OID640878080 
Productmajor facilitator transporter 
Protein accessionYP_001413769 
Protein GI154252945 
COG category 
COG ID 
TIGRFAM ID[TIGR00882] oligosaccharide:H+ symporter 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value0.00527244 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCTCTCG CCATCCGCCT TGCGACCGTC TACGGCACGA TGTTCCTGTT CACGGGCGTC 
TATCTGCCGT TCTTTCCGGT ATGGCTGAAG TCCGAGGGCC TCGCACCGAC CGAGATTTCG
CTGGTCGTCG CGCTGTCCCT GTTCCTGCGC ATCGTCGTCA GTCCCTTCTT CGCCGCCGTC
GCGGACAGGC TGGGCGACCG CCGCCGCGTC ATTCTGTGGC TCGCATGGGT GTCGCTCGCC
GTCGGCGCGC TCTTTCTGCT GGTGGAGGGC TTCGGGCCCA TCCTTCTCGT CTCGCTGGTG
CTGAACGCGG TCTTTCCGTC CATCGGCCCC CTGGTCGAAA CGATCTCCAT GCGCGCCCGT
ATCGATCACG GCATGAACTA CGGCCGCGTC CGTCTATGGG GCTCCATCAC CTTCGTGGGC
GCGAGCGTTG GCGCGGGCTG GCTTCTCGAA TGGAACCCGC CTTCCATCAT CGCCGTCTGC
CTCGTCGCGG CGCTTGCCTT CAACATTGCC GGTCTCTGGC TCCTGCCGCG CGAGGTCGGG
CGTCTGCGCA AGCCCGTGCC GAGCGGCCGC CAGTTCGCGG ATGTGCTGCA GATCGGCCGC
CACCCGGTCT TCATCCTGTT CGTGCTGACG GCGAGCCTCA CCCAGGCGAC CCATGCCGTC
TATTACGCCT TCGGCTCGCT CGCCTGGCAG CTTCAGGGTT ATTCGGACAG CGTGATCGGC
CTTCTTTGGG CGACGGGCGT TCTCGCCGAG ATCGTCCTTT TCTACATTTC CGGGCCGTTG
ATGGCGCGTT TCGGGGCGGT CCGCCTGCTC ATGCTGGCCG CCGCCGCCGC CATTCTCCGC
TGGACCGTCA CGGCCTTGAG CCCGCCTCTC GCCCTGCTTT TCGTCATGCA GGCGCTGCAT
GGCCTCACCT TCGGCGCGGC ACATCTCGGC GCGGTGCAGT TCGTCGCGCA GGCGGCGCCG
CCAAGGCTTG CGGCCACGGC CCAGAGCCTA TACGCAGCCA TGGCGTCCGG CGTTATGATG
GGCCTTGTGA CCATCGGCAT GGGGCCCATC TATGAAAGGC TTGGGCCTTA TGCCTATTTC
GTGATGGCGG GCGCGGGGGC GGTGGCCCTC GCCGGTGCCG TTCTTGTCGC GATGTGCTGG
AACGGCGACG TGCTCGTGCC GGAAGAAGAA CAGGAAGAAG AAAATGGCAA TTGA
 
Protein sequence
MSLAIRLATV YGTMFLFTGV YLPFFPVWLK SEGLAPTEIS LVVALSLFLR IVVSPFFAAV 
ADRLGDRRRV ILWLAWVSLA VGALFLLVEG FGPILLVSLV LNAVFPSIGP LVETISMRAR
IDHGMNYGRV RLWGSITFVG ASVGAGWLLE WNPPSIIAVC LVAALAFNIA GLWLLPREVG
RLRKPVPSGR QFADVLQIGR HPVFILFVLT ASLTQATHAV YYAFGSLAWQ LQGYSDSVIG
LLWATGVLAE IVLFYISGPL MARFGAVRLL MLAAAAAILR WTVTALSPPL ALLFVMQALH
GLTFGAAHLG AVQFVAQAAP PRLAATAQSL YAAMASGVMM GLVTIGMGPI YERLGPYAYF
VMAGAGAVAL AGAVLVAMCW NGDVLVPEEE QEEENGN