| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2429 |
|---|
| Symbol | lpxC |
|---|
| ID | 5454742 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 2624980 |
|---|
| End bp | 2625984 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640878005 |
|---|
| Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
|---|
| Protein accession | YP_001413695 |
|---|
| Protein GI | 154252871 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase |
|---|
| TIGRFAM ID | [TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.108142 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTCAGAG TGCAGAAATC GGAATTTGAA ACCATCATGC TGGAGAATGT CCGGCGGGAA
CGGCGTATCC GCGCGATCGC CTTTCCGCAG AAGACGCTCG TGCGCCCCGT CGTGATCGAC
GGCATCGGCC TGCACAGCGG CGCGGCGATC CACATGGTTC TGCATCCCGC CGAAGCCGAC
CGTGGCGTCG TTTTCCGGCG CACCGATCTC GTGGCCCAGG GCCGCGAGGT TTCCGACATT
CCCGCGACAT TCGATCATGT CGTCGATACG ACACTTTCCA CCGCCATCGG CAATGCCGCC
GGCACCACCG TCAGCACGGT CGAACATCTG ATGTCCGCCT TCTCGGCGCT CGGCATCGAC
AATGCGCTGG TGGAAATCGA TGGACCGGAA GTGCCGGTAC TCGACGGCAG CTCGGAAATC
TTCATCGATG CGATCGAGGG CGTGGGTATC GAAAAGCTCG ATGCGCCGCG CAAGGCGATC
CGCATCCTGA AGCCCGTTAT CGTCGAAGAT GGCGCGAAGC GCGCGGCCTT GCTGCCGGGC
GATGGTTTCC GTGTGTCCTT CGAGATCGAT TTCGACAATC CGCTGATCGG CCGTCAGGCG
CTTGAAGTGG ACCTGCATGA TGATTTCTTC GTCGAAGATA TCATGCGCGC CCGCACCTTC
TGCCTGCGCC GCGACATCGA GGCGATGTGG GCGGCGGGTC TCGCCAAGGG CGGCTCGCTC
GATAATGCGG TGGTCGTGGA TCAGGACCGT ATCCTCAATG AGGAAGGCCT GCGCTACGAA
GATGAATTCG TGCGCCACAA GGTGCTGGAC GCCGTGGGCG ATCTGGCGCT GTCCGGCCGG
CCGCTGATCG GCCGCTATGA AGGCTCGCGC GCCGGGCATG CCATGAACAA CCGCGTGCTG
CGGGCGCTGA TGGCCGACCG TTCGGCCTGG GAAGTGGTGG ATTTCACGGA CGCTTCCTCT
GCGGCCCATT CCGGCCCGGA ACTGGTGGCC ATCCCGGCCG ATTGA
|
|---|
| Protein sequence | MFRVQKSEFE TIMLENVRRE RRIRAIAFPQ KTLVRPVVID GIGLHSGAAI HMVLHPAEAD
RGVVFRRTDL VAQGREVSDI PATFDHVVDT TLSTAIGNAA GTTVSTVEHL MSAFSALGID
NALVEIDGPE VPVLDGSSEI FIDAIEGVGI EKLDAPRKAI RILKPVIVED GAKRAALLPG
DGFRVSFEID FDNPLIGRQA LEVDLHDDFF VEDIMRARTF CLRRDIEAMW AAGLAKGGSL
DNAVVVDQDR ILNEEGLRYE DEFVRHKVLD AVGDLALSGR PLIGRYEGSR AGHAMNNRVL
RALMADRSAW EVVDFTDASS AAHSGPELVA IPAD
|
|---|
| |