| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2313 |
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| Symbol | |
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| ID | 5453824 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 2480730 |
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| End bp | 2483969 |
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| Gene Length | 3240 bp |
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| Protein Length | 1079 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640877892 |
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| Product | carbamoyl-phosphate synthase, large subunit |
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| Protein accession | YP_001413584 |
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| Protein GI | 154252760 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
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| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.417995 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.014378 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAAAC GTACAGATAT CAAAAGCATC ATGATCATCG GCGCGGGGCC GATCATTATC
GGGCAGGCGT GCGAGTTCGA TTACTCCGGC ACGCAGGCCT GCAAGGCGCT GAAGGACGAG
GGCTACCGGA TCATCCTGGT GAACTCGAAC CCCGCCACGA TCATGACGGA CCCGGAGCTG
GCGGACGCGA CCTATATCGA GCCGATCACG CCGGAAGTCG TCGCGAAGAT CATCGAAAAG
GAACGGCCCG ACGCACTGCT GCCGACCATG GGCGGACAGA CCGCGCTCAA CACCGCGCTG
GCGCTTGCCG ACATGGGCGT GCTGGAAAAA TTCGGCGTCG AGATGATCGG CGCCAAGCGC
GAAGCGATCG AGATGGCCGA AGACCGCCAG CTCTTCCGCG ACGCGATGGA CCGCATCGGC
CTCGAAAGCC CGCGCTCGCG CGTCGCCCAC AATATGGAAG AAGCCCTTGC GGCGCTTGAG
TTCGTCGGCC TGCCCGCGAT CATCCGCCCC TCCTTCACCA TGGGCGGCAC GGGCGGCGGC
ATCGCCTATA ACCGGCAGGA ATTTTCCGAC ATCATCGAAA GCGGCCTCGA CGCGAGCCCG
GTGAACGAAG TGCTGGTCGA GGAAAGCGTG CTCGGCTGGA AGGAATACGA GATGGAAGTC
GTCCGCGACA AGGCGGACAA CTGCATCATC ATCTGCTCCA TCGAAAACGT CGACCCGATG
GGCGTCCATA CCGGCGACTC GATCACGGTC GCCCCCGCGC TGACGCTGAC AGATAAGGAA
TACCAGGTGA TGCGGAACGC GAGCATCGCC GTGCTGCGCG AGATCGGCGT CGAGACCGGC
GGCTCCAACG TGCAGTTCGC CGTCAACCCG AAGGACGGCC GCCTCGTCGT CATCGAAATG
AACCCGCGCG TCTCGCGCTC CTCGGCGCTC GCCTCCAAGG CGACGGGCTT TCCGATCGCG
AAGGTCGCCG CAAGGCTCGC CGTCGGCTAC ACGCTGGACG AACTCAGAAA CGACATCACC
AAGGTCACGC CCGCGAGCTT CGAGCCGACC ATCGACTATG TTGTCACGAA AATTCCGCGC
TTCGCCTTCG AGAAATTCGC GGGCGCCGAA AAGCTGCTCG GCACGGCAAT GAAATCCGTC
GGCGAAGCCA TGGCCATCGG CCGCACCTTC CAGGAGTCGC TCCAGAAGGC GCTGCGCTCG
ATGGAAACGG GCCTCACCGG CCTCAACGAA GTGACCGTGC CCGGCATGGG CGAAGGCGAC
GACAAGAACG CCATTCGCGC CGCGCTCGGC CGCCCGACGC CGGACCGCCT GCTCGTGATC
GCGCAGGCGC TGCGCGAGGG CATGAGCCAC GATCAGATAC AGGCCTCCTG CTCCTACGAT
CCCTGGTTCA TCGAACAATT GCAGGGCCTC ATCGACGCGG AAGCGGAAGT GCGTGGCAAA
GGCCTGCCGC AGACGAAAGC GGAAATGCGC CGCCTGAAGG CGATGGGATT TTCCGATGCG
CGGCTCGCGG AACTTGCAAG GAGCGAGGAG GAAGCCGTGC GCAAGGCGCG GCGCGAGATG
GGCGTGCGCC CGGTCTACAA GCGCATCGAT ACCTGCGCGG CCGAGTTCGA AAGCCTGACG
CCCTACATGT ATTCGACCTA TGAGACCGAT TTCGACGGCA AGGCCGATTG CGAGGCCGAT
CCTTCCGGCC GCAAGAAGGC GATCATCCTC GGCGGCGGAC CGAACCGCAT CGGCCAGGGC
ATCGAATTCG ACTATTGCTG CTGTCATGCG GCTTTCGCAC TCGCCGAAAT CGGCATCGAA
AGCATCATGG TCAACTGCAA CCCGGAAACC GTGTCGACCG ACTACGACAC GTCCGACCGG
CTCTATTTCG AACCGCTGAC CGCCGAAGAC GTGCTGGAAC TGATCGACCT TGAAATGTCG
AAGGGAACAC TGCTCGGCGT CATCGTTCAG TTCGGCGGGC AGACGCCGCT GAAACTCGCG
AACGACCTCG AACGCGCCAA GGTGCCGATC CTCGGCACCT CGCCCGACGC CATCGACCTC
GCCGAAGATC GCGACCGCTT CTCCGCGCTG CTCGAAAAGC TCGGCCTGAA GCAGCCGCCG
AACGGCATCG CGCGCTCCGC CGCCGAAGCG AAGATGATCG CCGAGCGCAT CGGCTACCCG
GTCGTCATCC GCCCCTCCTA CGTGCTGGGC GGCCGCGGCA TGGAAATCGT GCGCGACGCG
GCGCATCTCG ACCGCTACAT CAACGAAGCG GTGATCGTGT CCGGCAAGAG CCCTGTGTTG
ATCGACTACT ATCTGCGCGA CGCCATCGAG GTGGACGTCG ATGCGCTCTG CGACGGCAAG
GACGTCGTCA TCTGCGGCAT CATGGAGCAT ATCGAGGAAG CTGGCGTTCA TTCCGGCGAC
AGCGCCTGTT CGCTGCCGCC CTATTCGCTG AAACGCGAAA CCATTGCCGA GATCGAACGT
CAGACGCGCG ACATGGCGCT GGCGCTGAAT GTCGGCGGGC TGATGAACGT GCAATACGCG
ATCCAGGACG GCACGATCTA TGTGCTCGAA GTGAACCCGC GCGCCTCGCG CACCGTGCCC
TTCGTCGCAA AGGTGATCGG CGAGCCGGTG GCGAAGATTG CGGCCAAGGT CATGGCGGGC
GAAAGCCTTG CAAGCTTCAA CCTGAAGCCG GATGCGCATG GCCGCGTCGC GGTGAAGGAA
GCGGTCTTCC CCTTCGCGCG CTTCCCCGGC GTCGATACGA TCCTCGGGCC GGAAATGCGC
TCGACCGGCG AAGTAATGGG CCTCGACAGG AGCTTCGCCG TCGCCTTCGC CAAGAGCCAG
CTCGGCGGCG GCACCAAGGT GCCGGTGACC GGCACCGTGT TCGTGTCGGT GAAGGACAGC
GACAAGGCGA AGATCGTGGC GCCCGCGAAG AAACTCCTCG ACATGGGCTT CAAGCTGGTC
GCGACGGGCG GCACGCAGCG CTATCTCGCG GAACAGGGCA TTGAGGTCGG CACCATCAAC
AAGGTGCTCG AAGGCCGGCC GCACATCGTA GACGCGATCA AGAACGGCGA GGTCGCCCTC
GTCTTCAACA CCACGGAAGG CGCCCAGGCG CTCTCCGACT CGATGTCGCT CCGCCGTTCG
GCCCTGATGA TGAAGGTGCC TTATTATACG ACCGTGGCGG GCGCCCGCGC GGCCGTGGAA
GGCATCGACG CCATCCGCAA GGGTCAACTG GAAGTCGCGT CCCTCCAGTC CTATATTTAA
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| Protein sequence | MPKRTDIKSI MIIGAGPIII GQACEFDYSG TQACKALKDE GYRIILVNSN PATIMTDPEL
ADATYIEPIT PEVVAKIIEK ERPDALLPTM GGQTALNTAL ALADMGVLEK FGVEMIGAKR
EAIEMAEDRQ LFRDAMDRIG LESPRSRVAH NMEEALAALE FVGLPAIIRP SFTMGGTGGG
IAYNRQEFSD IIESGLDASP VNEVLVEESV LGWKEYEMEV VRDKADNCII ICSIENVDPM
GVHTGDSITV APALTLTDKE YQVMRNASIA VLREIGVETG GSNVQFAVNP KDGRLVVIEM
NPRVSRSSAL ASKATGFPIA KVAARLAVGY TLDELRNDIT KVTPASFEPT IDYVVTKIPR
FAFEKFAGAE KLLGTAMKSV GEAMAIGRTF QESLQKALRS METGLTGLNE VTVPGMGEGD
DKNAIRAALG RPTPDRLLVI AQALREGMSH DQIQASCSYD PWFIEQLQGL IDAEAEVRGK
GLPQTKAEMR RLKAMGFSDA RLAELARSEE EAVRKARREM GVRPVYKRID TCAAEFESLT
PYMYSTYETD FDGKADCEAD PSGRKKAIIL GGGPNRIGQG IEFDYCCCHA AFALAEIGIE
SIMVNCNPET VSTDYDTSDR LYFEPLTAED VLELIDLEMS KGTLLGVIVQ FGGQTPLKLA
NDLERAKVPI LGTSPDAIDL AEDRDRFSAL LEKLGLKQPP NGIARSAAEA KMIAERIGYP
VVIRPSYVLG GRGMEIVRDA AHLDRYINEA VIVSGKSPVL IDYYLRDAIE VDVDALCDGK
DVVICGIMEH IEEAGVHSGD SACSLPPYSL KRETIAEIER QTRDMALALN VGGLMNVQYA
IQDGTIYVLE VNPRASRTVP FVAKVIGEPV AKIAAKVMAG ESLASFNLKP DAHGRVAVKE
AVFPFARFPG VDTILGPEMR STGEVMGLDR SFAVAFAKSQ LGGGTKVPVT GTVFVSVKDS
DKAKIVAPAK KLLDMGFKLV ATGGTQRYLA EQGIEVGTIN KVLEGRPHIV DAIKNGEVAL
VFNTTEGAQA LSDSMSLRRS ALMMKVPYYT TVAGARAAVE GIDAIRKGQL EVASLQSYI
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