Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_2276 |
Symbol | |
ID | 5456345 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 2443012 |
End bp | 2444946 |
Gene Length | 1935 bp |
Protein Length | 644 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640877855 |
Product | excinuclease ABC, C subunit |
Protein accession | YP_001413547 |
Protein GI | 154252723 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0322] Nuclease subunit of the excinuclease complex |
TIGRFAM ID | [TIGR00194] excinuclease ABC, C subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 59 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGACA TCGAAGACAA CGCTCCCGAA GCCCCCACCG TCCCCGGCGA CGGCGCGGAA ACCCGTGCGA TTTCAACGCC CGGCGGGGCG GCCCTGATTG CCGAAAAGGT GAAATTGCTG CCGGACAGCC CCGGCGTCTA CCGCATGTAC GGCACCGGCG GCGAGCTTCT CTATGTCGGT AAGGCGCGCA GCCTGAAGAA GCGCGTCGCA AGCTATACCA AGCTTGCCGG CCATTCGAAC CGCATCGCCC GCATGATCGC GTCCACGATC CAGATGGAAT TCATCTCGAC GGCCACCGAG ACGGATGCCC TGCTCCTCGA AGCCAATCTC ATCAAGCGCC TGAAGCCCCG CTACAACGTG CTGATGCGGG ACGACAAGTC CTTCCCCTAT ATCCTGCTGA CCGGAGACCA TGATTTCCCG CAGGTCGTGA AGCATCGCGG CGGGCGCTCC CGCCCCGGCG ATTATTATGG GCCCTTTGCC AGTGCCGGCG CCGTCACCGC CACGCTGAAT GCCTTGCAGA AGGCGTTCCT GCTCCGCTCC TGCTCCGACA GCGTCTTTGA AAGCCGCACC CGTCCCTGTC TCCTGTTCCA GATCAAGCGG TGCAGCGCCC CTTGCACCGG CGAAATCGAC CGCGAGAGCT ACGCCGTCCT TCTCGCCGAG GCGCGCGACT TCCTGCGCGG CCGCAGCCGC AAGACGCAGC AGCAGCTTGT CGAATTGATG GAGAAGGCTT CGGCCGACCT CGATTTCGAG CAGGCCTCGA TCTATCGCGA CCGCATCCGC GCCCTGACGC AGATCCAGCA GCATCAGGGC ATCAACCCGC AAACCGTGAC GGAAGCCGAT GTCTTCGCCG CATGGACGGA AGGTGGTCAG ACCTGCGTCC AGGTCTTCTT CTTCCGCGCC GGGCAGAACT GGGGCAACCG CGCCTATTTC CCGCGCCACG ACAAGGAACT CTCCACCGAG GAAGTCCTCG ATGCCTTCCT GGCGCAGTTC TACGAAGACC GTCCCCCTCC CCGCCTCGTG CTTCTGAGCC ATGACGTGCC GGGCCGCGCC CTTCTCGCCG AAGCTCTCAC CATCCGCGCC GGCCGCAAGG TCGCCGTCGG CTTGCCGAAG CGCGGCGAGA AGCGCCAGCT CGTCGACCAT GCGCTGCTGA ACGCGCGCGA AGCCTTGGGC CGCCGCCTCG CGGAAAGCTC CTCGCAGCGC AAACTGCTGG AAGGCGTCGC CGAGGCTTTC GGCCTCGAAC AGCCGCCCGC CCGCATTGAA GTCTACGACA ACAGCCATAT TTCAGGCTCC CAGGCCGTGG GCGGCATGAT CGTCGCGGGC CCGGACGGCT TCATGAAAAA CCAGTACCGC AAGTTCAACA TCAAGGGCGA CGACATCGAG CCCGGCGACG ACTACGCGAT GATGCGCCAG GTGCTCACCC GCCGCTTTAC GCGCCTCCTG AAGGAGAGCG AGGGCAAGCC GGCGGATGAA ACCTGGCCGG ACCTCCTCCT CATCGACGGT GGCGCGGGGC AGTTGAAGGT GGCGCTCGAA GTGCTGGCCG AACTCGGCAT AGACAACGTC ACCGCGGTCG GCGTCGCCAA GGGGCCCGAG CGTGACGCGG GCCGCGAGCG CTTCTTCATG GCCGGGCGGC CGGATTTCAT GATGGAACCG CGAAATCCCG TTCTCTACTA CCTGCAACGT CTGCGCGACG AGGCCCACCG CTACGCCATC GGCAGCCACC GCGCCCGCCG CTCGAAGGCG ATCGGCGTAA ATCCGCTCGA CGATGTGCCA GGCGTCGGCC CCGGCCGCAA ACGTGCCCTG CTGCAACATT TCGGCTCGGC CCGCGCCGTG GCGCGTGCCG GCCTCGCCGA TCTTGAATCC GTGGAGGGCA TCAGCGCCAA AGTGGCGCGC GCCGTTTACG ATCATTTCCA CGGAAATCCG GATAGCGCGC CTTGA
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Protein sequence | MNDIEDNAPE APTVPGDGAE TRAISTPGGA ALIAEKVKLL PDSPGVYRMY GTGGELLYVG KARSLKKRVA SYTKLAGHSN RIARMIASTI QMEFISTATE TDALLLEANL IKRLKPRYNV LMRDDKSFPY ILLTGDHDFP QVVKHRGGRS RPGDYYGPFA SAGAVTATLN ALQKAFLLRS CSDSVFESRT RPCLLFQIKR CSAPCTGEID RESYAVLLAE ARDFLRGRSR KTQQQLVELM EKASADLDFE QASIYRDRIR ALTQIQQHQG INPQTVTEAD VFAAWTEGGQ TCVQVFFFRA GQNWGNRAYF PRHDKELSTE EVLDAFLAQF YEDRPPPRLV LLSHDVPGRA LLAEALTIRA GRKVAVGLPK RGEKRQLVDH ALLNAREALG RRLAESSSQR KLLEGVAEAF GLEQPPARIE VYDNSHISGS QAVGGMIVAG PDGFMKNQYR KFNIKGDDIE PGDDYAMMRQ VLTRRFTRLL KESEGKPADE TWPDLLLIDG GAGQLKVALE VLAELGIDNV TAVGVAKGPE RDAGRERFFM AGRPDFMMEP RNPVLYYLQR LRDEAHRYAI GSHRARRSKA IGVNPLDDVP GVGPGRKRAL LQHFGSARAV ARAGLADLES VEGISAKVAR AVYDHFHGNP DSAP
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